Job Description P76116 Confidence 99.50% Date Wed Jan 25 15:21:05 GMT 2012 Rank 91 Aligned Residues 310 % Identity 9% Template c2pm9A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec31; PDBTitle: crystal structure of yeast sec13/31 vertex element of the2 copii vesicular coat Resolution 3.30 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.						.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																																					.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.
Query Sequence		S	T	Q	A	A	E	E	M	L	R	K	A	V	G	K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	.	.	.	.	.	T	L	E	V	T	Q	A	I	H	N	D	L	K	P	F	G	A	T	I	N	N	T	T	Q
Query Conservation																																																					.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.											.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.
Template Sequence		A	A	D	S	E	K	P	I	A	S	L	Q	V	D	S	K	F	N	D	L	D	W	S	H	N	N	K	I	I	A	G	A	L	D	.	.	.	.	.	.	.	N	G	S	L	E	L	Y	S	T	N	E	A	N	N	A	I	N	S	M	A	R	F	S	N	H	S	S	S	V	K	T	V	K	F	N	A	K	Q	D
Template Known Secondary structure		S	G	G	G		S		S						S	S									S	S	S	S							S	.	.	.	.	.	.	.	S	S								S	S	T	T	S											S	S	S									S	S	S	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.								.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	L	A	S	G	G	N	N	G	E	I	F	I	W	D	M	N	K	C	T	E	S	P	S	N	Y	T	P	L	T	P	G	Q	S	M	S	S	V	D	E	V	I	S	L	A	W	N	Q	S	L	A	H	V	F	A	S	A	G	S	S	N	F	A	S	I	W	D	L	K	A	K	K	E	V	I	H	L	S	Y
Template Known Secondary structure		T	B						S	S	S				B		B	T	T	T	T	S	S		T	T	T				B					S			S	S										S	S		T	T						S	S	S	S							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		182	.	.								.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.
Query Sequence		N	T	G	.	.	.	.	.	.	.	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E
Query Conservation					.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	S	P	N	S	G	I	K	Q	Q	L	S	V	V	E	W	H	P	K	N	S	T	R	V	A	T	A	T	G	S	D	N	D	P	S	I	L	I	W	D	L	R	N	A	N	T	P	L	Q	T	L	N	Q	G	H	Q	K	G	I	L	S	L	D	W	C	H	Q	D	E	H	L	L	L	S	S	G	R	D	N	T
Template Known Secondary structure					S	S													S	S		T	T									S	S	S								T	T	S	T	T	S		S	B				S			S	S									S	S		S	S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.															.	.	.
Predicted Secondary structure																					.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	.	.	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	T	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	S
Query Conservation																					.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	L	W	N	P	E	S	A	E	Q	L	S	Q	F	P	A	R	G	N	W	C	F	K	T	K	F	A	P	E	A	P	D	L	F	A	C	A	S	F	D	N	K	I	E	V	Q	T	L	Q	N	L	T	N	T	L	D	E	S	K	E	K	P	S	V	F	H	L	Q	A	P	T	W	Y	G	E	P	S	P	A
Template Known Secondary structure							S	S	S										S	S	S									T	T		T	T							S	S	S							S						S	S					S				S	S						S	T	T				S
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E	A	T	Q
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		A	H	W	A	F	G	G	.	K	L	V	Q	I	T	P	D	G	K	G	V	S	I	T	N	P	K
Template Known Secondary structure						T	T	T	.					B		T	T	S	S		B			B
Template Predicted Secondary structure									.
Template SS confidence
		384	.	.	.	.	.	390		.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions