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Job DescriptionP76116
Confidence99.27%DateWed Jan 25 15:21:05 GMT 2012
Rank123Aligned Residues287
% Identity10%Templatec2ovqB_
PDB info PDB header:transcription/cell cycleChain: B: PDB Molecule:f-box/wd repeat protein 7; PDBTitle: structure of the skp1-fbw7-cyclinedegc complex
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   41........50.........60.........70.........80......... 90.........100.........110.........
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Query Sequence  KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL. KPFGATINNTTQTLWFGNTVNSAVTAIDAK
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Template Sequence  DDHVITCLQFCGNRIVSGSD. . . . . . . DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN. . . IIISGSTDRTLKVWNAE
Template Known Secondary structure  TTS
TTT.......TS
TTT




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   2380.........2390......... 2400.........2410.........2420.........2430.. .......2440.........
 
   120.........130. ........140.........150.........160.........170.........180.
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Query Sequence  TGEVKGRLVLDD. . . . . . . . . . . . . . . . . . RKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ
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Template Sequence  TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE
Template Known Secondary structure  T




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GG
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   2450.........2460.........2470.........2480.........2490.........2500.........2510.........2520.........
 
   182.......190.........200.........210.........220.........230.........240.........250.........260.
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Query Sequence  NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR
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Template Sequence  TETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK
Template Known Secondary structure  GT


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   2530.........2540.........2550.........2560.........2570.........2580.........2590.........2600.........
 
   262.......270. ........280.........290.........300.........310 .........320.........330..
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Query Sequence  NGNILAKVAA. . . PESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF. . . . . . DTPTHPNSLALSADGKTLYVSV
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Template Sequence  TGQCLQTLQGPNKHQSAVTCLQFNKNFVITS. SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK. LVCAVG
Template Known Secondary structure  T


STT

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   2610.........2620.........2630.........2640 .........2650.........2660.........2670.........2680. ......
 
   333......
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Query Sequence  KQKSTKQ
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Template Sequence  SRNGTEE
Template Known Secondary structure 
SSSSS
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   2688.2690....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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