Job Description P76116 Confidence 99.57% Date Wed Jan 25 15:21:05 GMT 2012 Rank 77 Aligned Residues 287 % Identity 10% Template c2ismA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of the putative oxidoreductase (glucose2 dehydrogenase) (ttha0570) from thermus theromophilus hb8 Resolution 1.90 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.					.	90	.	.	.	.	.	.	.	.	.	100	.									.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.														.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.														.	.	.	.	.	.	.	.
Query Sequence		K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	.	.	.	.	L	K	P	F	G	A	T	I	N	N	T	T	Q	.	.	.	.	.	.	.	.	T	L	W	F	G	N	T
Query Conservation																																																		.	.	.	.														.	.	.	.	.	.	.	.
Alig confidence															.							.	.	.	.	.	.	.																						.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation															.							.	.	.	.	.	.	.
Template Sequence		E	V	P	W	A	L	A	F	L	P	D	G	G	.	M	L	I	A	E	R	.	.	.	.	.	.	.	P	G	R	I	R	L	F	R	E	G	R	L	S	T	Y	A	E	L	S	V	Y	H	R	G	E	S	G	L	L	G	L	A	L	H	P	R	F	P	Q	E	P	Y	V	Y	A	Y	R	T	V	A	E	G	G
Template Known Secondary structure		S									T	T	S		.						T	.	.	.	.	.	.	.	T	T							T	T													S	T	T		S								T	T	T	T	T	S											T	T	S
Template Predicted Secondary structure															.							.	.	.	.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.								50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	N	Q	V	V	R	L	R	H	L	G	E	R	G	V	L	D	R	V	V	L	D	G	I	P	A	R	P	H	G	L	H	S	G	G	R	I	A	F	G	P	D	G	M	L	Y	V	T	T	G	E	V	Y	E	R	E	L	A	Q	D	L	A	S	L	G	G	K	I	L	R	L	T	P	E	G	E	P	A	P
Template Known Secondary structure		S											S	S																T	T												T	T	S									T	T		G	G	G	G	G		T	T		S	S	S							T	T	S	S	B		T
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		189	190	.	.	.					.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.						.	.	.	.	.
Predicted Secondary structure							.	.	.	.																																																														.	.	.	.	.
Query SS confidence							.	.	.	.																																																														.	.	.	.	.
Query Sequence		G	L	A	L	D	.	.	.	.	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	.	.	.	.	.	V	L	V	V	D
Query Conservation							.	.	.	.																																																														.	.	.	.	.
Alig confidence							.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	N	P	F	L	G	R	R	G	A	R	P	E	V	Y	S	L	G	H	R	N	P	Q	G	L	A	W	H	P	K	T	G	E	L	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	H	G	P	G	H	D	E	V	N	L	I	V	P	G	G	N	Y	G	W	P	R	V	V	G	R	G	N
Template Known Secondary structure		T		T	T	T	T		T	T	S		T	T							S									T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	T		B			T	T	T			S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.																.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.							.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																													.	.	.	.	.	.												.
Query SS confidence																																													.	.	.	.	.	.												.
Query Sequence		T	R	N	G	N	I	L	A	K	V	A	A	P	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	.	.	.	.	.	.	S	Y	K	V	V	K	T	F	D	T	P	.	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V
Query Conservation																																													.	.	.	.	.	.												.
Alig confidence																																													.	.	.	.	.	.												.														.
Template Conservation																																																																												.
Template Sequence		D	P	R	Y	R	D	P	L	Y	F	W	P	Q	G	F	P	P	G	N	L	A	F	F	R	G	D	L	Y	V	A	G	L	R	G	Q	A	L	L	R	L	V	L	E	G	E	R	G	R	W	R	V	L	R	V	E	T	A	L	S	G	F	G	R	L	R	E	V	Q	V	G	P	D	G	A	.	L	Y	V	T	T
Template Known Secondary structure			T	T	S				S				T	T											T	T							T	T	T	T											T	T													S	S										T	T	S		.
Template Predicted Secondary structure																																																																												.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	K	S	T	K	Q	Q	E	A	T	Q	P	D	D	V	I	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	N	R	D	G	R	G	Q	V	R	P	G	D	D	R	V	L	R	L
Template Known Secondary structure			S	T	T	T	T	S				T	T		S
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions