Job Description P76116 Confidence 99.41% Date Wed Jan 25 15:21:05 GMT 2012 Rank 106 Aligned Residues 226 % Identity 11% Template c2fp8A_ PDB info PDB header:lyase Chain: A: PDB Molecule:strictosidine synthase; PDBTitle: structure of strictosidine synthase, the biosynthetic entry to the2 monoterpenoid indole alkaloid family Resolution 2.30 Å

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		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D
Query Conservation
Alig confidence																		.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	N	S	F	T	F	D	S	T	N	K	G	F	Y	T	S	.	V	Q	D	G	R	V	I	K	Y	E	G	P	N	S	G	F	V	D	F	A	Y	A	S	P	Y	W	N	K	A	F	C	E	N	S	T	D	A	E	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T		S	S					.		T	T	S								T	T	T								S		T	T							T	T				G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	.
Query Conservation																																																																																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																																																					.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	P	L	C	G	R	T	Y	D	I	S	Y	N	L	Q	N	N	Q	L	Y	I	V	D	C	Y	Y	H	L	S	V	V	G	S	E	G	G	H	A	T	Q	L	A	T	S	V	D	G	V	P	F	K	W	L	Y	A	V	T	V	D	Q	R	T	G	I	V	Y	F	T	D	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.													T	T	T	T							T	T	T							T	T									S			T	T				S									T	T	T								S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
																		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.																																		.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.																																		.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	.	A	P	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	.	.	Y	K	V	V	K	T	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.																																		.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.																																		.	.
Template Conservation
Template Sequence		S	T	L	Y	D	D	R	G	V	Q	Q	I	M	D	T	S	D	K	T	G	R	L	I	K	Y	D	P	S	T	K	E	T	T	L	L	L	K	E	L	H	V	P	G	G	A	E	V	S	A	D	S	S	F	V	L	V	A	E	F	L	S	H	Q	I	V	K	Y	W	L	E	G	P	K	K	G	T	A	E	V	L
Template Known Secondary structure			S	S			T	T									T											T	T	T	T										S									T	T	S	S							G	G	G	T							S	S	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	P	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E	A	T	Q	P	D	D	V	I	R	I	A
Query Conservation
Alig confidence																	.
Template Conservation																	.
Template Sequence		V	K	I	P	N	P	G	N	I	K	R	N	A	D	G	.	H	F	W	V	S	S	S	E	E	L	D	G	N	M	H	G	R	V	D	P	K	G	I	K	F	D
Template Known Secondary structure					S	S								T	T	S	.										T	T	S	S	T	T	S
Template Predicted Secondary structure																	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions