Phyre 2 alignment of P76116 with c2eepA

Job Description P76116
Confidence 98.37% Date Wed Jan 25 15:21:05 GMT 2012

Rank 158 Aligned Residues 288

% Identity 12% Template c2eepA_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl aminopeptidase iv, putative; PDBTitle: prolyl tripeptidyl aminopeptidase complexed with an inhibitor

Resolution 2.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K
Query Conservation
Alig confidence																	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.
Template Sequence	S	F	R	T	L	D	A	G	R	G	L	V	V	L	F	T	.	.	.	.	.	.	.	Q	G	G	L	V	G	F	D	M	L	A	R	K	V	T	Y	L	F	D	T	N	E	E	T	A	S	L	D	F	S	P	V	G	D	R	V	A	Y	V	R	N	H	N	L	Y	I	A	R	G	G	K	L	G	E	G	M	S
Template Known Secondary structure							T	T	T	T							.	.	.	.	.	.	.	T	T							T	T	T	T									T	T			T	T					T	T	S	S							T	T								B		T	T	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.
Template SS confidence
	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.								.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.

	125	.	.	.	.	130	.	.	.	.	.	.	.	.	.									140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	.	.	.	.	.	.	.	.	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	R	A	I	A	V	T	I	D	G	T	E	T	L	V	Y	G	Q	A	V	H	Q	R	E	F	G	I	E	K	G	T	F	W	S	P	K	G	S	C	L	A	F	Y	R	M	D	Q	S	M	V	K	P	T	P	I	V	D	Y	H	P	L	E	A	E	S	K	P	L	Y	Y	P	M	A	G	T	P	S	H	H	V	T
Template Known Secondary structure					S		S			B	T	T				S	S			G	G	G		T	T				S					T	T	S	S										T	T	S										S	S	S										B	T	T	S
Template Predicted Secondary structure
Template SS confidence
	183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

	166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.						.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.					.
Predicted Secondary structure																							.	.																.	.	.	.	.																																.	.	.	.
Query SS confidence																							.	.																.	.	.	.	.																																.	.	.	.
Query Sequence	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	.	.	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	.	.	.	.	.	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	.	.	.	.	I
Query Conservation																							.	.																.	.	.	.	.																																.	.	.	.
Alig confidence																							.	.																.	.	.	.	.																																.	.	.	.
Template Conservation
Template Sequence	V	G	I	Y	H	L	A	T	G	K	T	V	Y	L	Q	T	G	E	P	K	E	K	F	L	T	N	L	S	W	S	P	D	E	N	I	L	Y	V	A	E	V	N	R	A	Q	N	E	C	K	V	N	A	Y	D	A	E	T	G	R	F	V	R	T	L	F	V	E	T	D	K	H	Y	V	E	P	L	H	P	L	T
Template Known Secondary structure						T	T	T	T									S		T	T										T	T	S	S									T	T	S										T	T	T													S	S						S
Template Predicted Secondary structure
Template SS confidence
	263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

	235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.					.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.																						.	.	.	.
Query SS confidence																																								.	.																						.	.	.	.
Query Sequence	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	.	.	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	.	.	.	.	K	V	S	V	I	D	A	K	S	Y	K	V	V	K
Query Conservation																																								.	.																						.	.	.	.
Alig confidence																																								.	.																						.	.	.	.
Template Conservation
Template Sequence	F	L	P	G	S	N	N	Q	F	I	W	Q	S	R	R	D	G	W	N	H	L	Y	L	Y	D	T	T	G	R	L	I	R	Q	V	T	K	G	E	W	E	V	T	N	F	A	G	F	D	P	K	G	T	R	L	Y	F	E	S	T	E	A	S	P	L	E	R	H	F	Y	C	I	D	I	K	G	G	K	T	K	D
Template Known Secondary structure			T	T		S	S								T	T	S	S								T	T	S							S		S	S	S										T	T	S								S	S	S		T	T		B							T	T
Template Predicted Secondary structure
Template SS confidence
	343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.

	309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence	T	F	D	T	P	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q
Query Conservation
Alig confidence	.
Template Conservation	.
Template Sequence	.	L	T	P	E	S	G	M	H	R	T	Q	L	S	P	D	G	S	A	I	I	D	I	F	Q	S	P	T	V	P	R	K
Template Known Secondary structure	.	S			S	S	S								S	S	S	S									S	S		S
Template Predicted Secondary structure	.
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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