Job Description P76116 Confidence 98.27% Date Wed Jan 25 15:21:05 GMT 2012 Rank 160 Aligned Residues 288 % Identity 9% Template c2ecfA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl peptidase iv; PDBTitle: crystal structure of dipeptidyl aminopeptidase iv from2 stenotrophomonas maltophilia Resolution 2.80 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.						.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.
Query Sequence		G	K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	L	K	P	.	.	.	.	.	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T
Query Conservation																																																						.	.	.	.	.
Alig confidence																										.																												.	.	.	.	.
Template Conservation																										.
Template Sequence		G	P	T	L	M	K	P	K	V	A	P	D	G	S	R	V	T	F	L	R	G	K	D	S	.	D	R	N	Q	L	D	L	W	S	Y	D	I	G	S	G	Q	T	R	L	L	V	D	S	K	V	V	L	A	M	T	G	I	V	D	Y	Q	W	S	P	D	A	Q	R	L	L	F	P	L	G	G	E	L	Y	L	Y
Template Known Secondary structure												T	T	S	S									S	S	.		T	T									T	T	T									G	G	G	T						S							T	T	S	S							T	T
Template Predicted Secondary structure																										.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.																														.	.	.																												.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.																														.	.	.
Template Sequence		D	L	K	Q	E	G	K	.	.	.	.	.	.	.	.	.	A	A	V	R	Q	L	T	H	G	E	G	F	A	T	D	A	K	L	S	P	K	G	G	F	V	S	F	I	R	.	.	.	G	R	N	L	W	V	I	D	L	A	S	G	R	Q	M	Q	L	T	A	D	G	S	T	T	I	G	N	G	I	A	E	F
Template Known Secondary structure			S	S	S		S	T	.	.	.	.	.	.	.	.	.	T	S			B				S	S	S									T	T	S	S							.	.	.	T	T							T	T	T	T											S	S				S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.																														.	.	.
Template SS confidence
		135	.	.	.	.	140	.										.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
													190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.																																	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	D	E	E	M	D	R	H	T	G	Y	W	W	A	P	D	D	S	A	I	A	Y	A	R	I	D	E	S	P	V	P	V	Q	K	R	Y	E	V	Y	A	D	R	T	D	V	I	E	Q	R	Y	P	A	A	G	D	A	N	V	Q	V	K	L	G	V	I	S	P	A	E	Q	A	Q	T	Q	W	I	D	L	G
Template Known Secondary structure							S					S					T	T	S	S										T	T	S										S	S											B	T	T	S												S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.				.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.							.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.																							.	.	.	.	.	.
Query SS confidence																													.	.	.																							.	.	.	.	.	.
Query Sequence		D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	.	.	.	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	S	L	.	.	.	.	.	.	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S
Query Conservation																													.	.	.																							.	.	.	.	.	.
Alig confidence																													.	.	.																							.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	Q	D	I	Y	L	A	R	V	N	W	R	D	P	Q	H	L	S	F	Q	R	Q	S	R	D	Q	K	K	L	D	L	V	E	V	T	L	A	S	N	Q	Q	R	V	L	A	H	E	T	S	P	T	W	V	P	L	H	N	S	L	R	F	L	D	D	G	S	I	L	W	S	S	E	R	T	G	F	Q	H	L
Template Known Secondary structure		S		S	S											T	T									T	T	S	S									T	T	T												S	S						S						T	T	S								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	T	H	P	N	S	L	A	.	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		Y	R	I	D	S	K	G	K	A	A	A	L	T	H	G	N	W	S	V	D	E	L	L	A	V	D	E	K	A	G	L	A	Y	F	R	A	G	I	E	S	A	R	E	S
Template Known Secondary structure						S	S	S					S			S	S	S										T	T	T	T								S	S		T	T		B
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions