Job Description P76116 Confidence 99.57% Date Wed Jan 25 15:21:05 GMT 2012 Rank 74 Aligned Residues 303 % Identity 13% Template c2eceA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:462aa long hypothetical selenium-binding protein; PDBTitle: x-ray structure of hypothetical selenium-binding protein2 from sulfolobus tokodaii, st0059 Resolution 2.00 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.						.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.														.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																						.											.	.	.	.	.										.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.											.	.	.	.	.										.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	.	G	V	V	Y	R	L	D	P	V	T	.	.	.	.	.	L	E	V	T	Q	A	I	H	N	.	.	.	D	L	K	P	F	G	A	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	N	N	T	T	Q	T	L	W	F	G
Query Conservation																						.											.	.	.	.	.										.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.											.	.	.	.	.										.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	P	P	E	D	L	A	Y	V	A	C	L	Y	T	G	T	G	I	N	R	A	D	F	I	A	V	V	D	V	N	P	K	S	E	T	Y	S	K	I	V	H	K	V	E	L	P	Y	I	N	D	E	L	H	H	F	G	W	N	A	C	S	S	A	L	C	P	N	G	K	P	N	I	E	R	R	F	L	I	V	P
Template Known Secondary structure		S				S									T	T	T	T														T	T	S	T	T	T	T	S								S	S	S				B						S			G	G	G	G	S	T	T			T	T			S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		107	.	.	110	.	.	.	.	.	.	.	.	.					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160				.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.																																										.	.	.
Query SS confidence															.	.	.	.																																										.	.	.
Query Sequence		N	T	V	N	S	A	V	T	A	I	D	A	K	.	.	.	.	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	.	.	.	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A
Query Conservation															.	.	.	.																																										.	.	.
Alig confidence															.	.	.	.																						.	.																			.	.	.
Template Conservation																																								.	.
Template Sequence		G	L	R	S	S	R	I	Y	I	I	D	T	K	P	N	P	R	E	P	K	I	I	K	V	I	E	P	E	E	V	K	K	V	S	G	Y	S	R	.	.	L	H	T	V	H	C	G	P	D	A	I	Y	I	S	A	L	G	N	E	E	G	E	G	P	G	G	I	L	M	L	D	H	Y	S	F	E	P	L	G	K
Template Known Secondary structure		B	T	T	T										S		T	T	S																					.	.								S	S										T	T	S		S									T	T	T
Template Predicted Secondary structure																																								.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		180	.	.	.		.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.																				.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure						.							.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.							.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	Q	N	T	.	G	K	M	S	T	G	.	.	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S
Query Conservation						.							.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.							.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	E	I	D	R	G	D	Q	Y	L	A	Y	D	F	W	W	N	L	P	N	E	V	L	V	S	S	E	W	A	V	P	N	T	I	E	D	G	L	K	L	E	H	L	K	D	R	Y	G	N	R	I	H	F	W	D	L	R	K	R	K	R	I	H	S	L	T	L	G	E	E	N	R	M	A	L	E	L	R	P	L
Template Known Secondary structure				S	B		T	T											T	T	T	T						B								T	T				T	T	T					S									T	T	T	T								S		T	T
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250						.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.																							.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure															.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	D	T	A	R	Q	R	A	F	I	T	D	S	.	.	.	.	.	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	S	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	F	N	P	A	R	N	E	A	Y	V	T	H
Query Conservation															.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	D	P	T	K	L	M	G	F	I	N	M	V	V	S	L	K	D	L	S	S	S	I	W	L	W	F	Y	E	D	G	K	W	N	A	E	K	V	I	E	I	P	A	E	P	L	E	G	N	L	P	E	I	L	K	P	F	K	A	V	P	P	L	V	T	D	I	D	I	S	L	D	D	K	F	L	Y	L	S	L
Template Known Secondary structure		S	S	T	T												T	T	T												T	T																	S	S			G	G	G	G	G	G	T													T	T	S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.				.	.	.	.	.	.	310	.	.	.																.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.				.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query SS confidence															.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Query Sequence		R	Q	A	G	K	V	S	V	I	D	A	K	S	.	.	.	Y	K	V	V	K	T	F	D	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	.	.	.	Q	K	S	T	K	Q	Q	E	A	T	Q	P	D	D	V	I
Query Conservation															.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Alig confidence															.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation
Template Sequence		W	G	I	G	E	V	R	Q	Y	D	I	S	N	P	F	K	P	V	L	T	G	K	V	K	L	G	G	I	F	H	R	A	D	H	P	A	G	H	K	L	T	G	A	P	Q	M	L	E	I	S	R	D	G	R	R	V	Y	V	T	N	S	L	Y	S	T	W	D	N	Q	F	Y	P	E	G	L	K	G	W	M	V
Template Known Secondary structure		T	T	T	T								S	S	T	T	S										B	T	T	T	T		B			T	T	S					S									T	T	S	S																	S	T	T
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	N	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		420	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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