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Job DescriptionP76116
Confidence98.19%DateWed Jan 25 15:21:05 GMT 2012
Rank163Aligned Residues304
% Identity11%Templatec2bklB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:prolyl endopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl2 endopeptidases: role of inter-domain dynamics in3 catalysis and specificity
Resolution1.5 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   43......50.........60.........70.........80... ......90.........100.........110.........120.
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Query Sequence  AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ. AIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG
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Template Sequence  LGTWAVSWDGKKVAFAQKPNAADE. . AVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPG
Template Known Secondary structure 
TTSSTT
S
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TTT

B
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BS

TT



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TTS
TTTGGG
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   123......130.........140...... ...150.........160.........170.........180.........190.........200
 
   122 .......130.........140... ......150.........160.........170.........180.........190....
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Query Sequence  E. VKGRLVLDDRKRTEEVRPLQP. . . . . . RELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS
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Template Sequence  YTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHAW
Template Known Secondary structure  G
TTS
GGG





TT

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TTT
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   201........210.........220.........230.........240.........250.........260.........270.........280
 
   195....200...... ...210.........220.........230.........240.........250.........260.........270.
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Query Sequence  EGKRLYTTNADG. . . ELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA
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Template Sequence  KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLP
Template Known Secondary structure  TT
TT
TT
BTTB
SGGG



SS
TTTTTT




S
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   281........290.........300.........310.........320.........330.........340.........350.........360
 
   272..... ..280.........290..... ....300.........310...... ...320.........330........
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Query Sequence  PESLAV. . LFNPARNEAYVTHRQAGK. . . VSVIDAKSYKVVKTFDTPTHP. . . . . . . . NSLALSADGKTLYVSVKQKSTK
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Template Sequence  GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAKVDVPMNPEQYQVEQVFYASKDGTKVPMFVVHRKDL
Template Known Secondary structure  SSS


BS
TT
STTTTT




S

GGG
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TT
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   361........370.........380.........390.........400.........410.........420.........430.........440
 
   339340........
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Query Sequence  QQEATQPDDV
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Template Sequence  KRDGNAPTLL
Template Known Secondary structure 

SS


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   441........450
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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