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Job DescriptionP76116
Confidence97.67%DateWed Jan 25 15:21:05 GMT 2012
Rank168Aligned Residues226
% Identity14%Templatec2be1A_
PDB info PDB header:transcriptionChain: A: PDB Molecule:serine/threonine-protein kinase/endoribonuclease ire1; PDBTitle: structure of the compact lumenal domain of yeast ire1
Resolution2.98 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   53......60.........70.........80.........90........ .100.........110.........120.......
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Query Sequence  NALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINN. . . . . TTQTLWFGNTVNSAVTAIDAKTGEVKGRL
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Template Sequence  DILIAADV. . . . . . . EGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL
Template Known Secondary structure  T.......TS
TTTT
GGGS

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TTTSS

STTTTTT
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   121....... .130.........140.........150.........160.........170.........180.........190...
 
   128.130.........140.. .......150.........160.........170.........180.........190.........200.....
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Query Sequence  VLDDRKRTEEVRPLQ. . PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNAD
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Template Sequence  SIRQLVSTSPLHLKTNEDEKVYTGSMRTIMYTINMLNGEIISAFGPGS. . . . . . . . . . . . . . . . . . . KNGENMIVIGKTI
Template Known Secondary structure  TT
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TTT

STT
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   194.....200.........210.........220.........230.........240. ........250....
 
   206...210.........220.........230.........240.........250.........260......... 270.........280
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Query Sequence  GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV. AAPESLAVLFN. . . .
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Template Sequence  FELGIHSYDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARWVSPTFPGIIVGLFDVFND
Template Known Secondary structure 


TTS






TTTTT
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SSS

TTT
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   285....290.........300.........310.........320.........330.........340.........350.........360....
 
   281........290.........300....
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Query Sequence  . . . . . . . . . . . . PARNEAYVTHRQAGKVSVIDAKSY
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Template Sequence  LRTNENILVPHPFNPNKVYLDQTSNLSWFALSSQNF
Template Known Secondary structure  TTTT







TT

TTT
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   365....370.........380.........390.........400
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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