Job Description P76116 Confidence 98.90% Date Wed Jan 25 15:21:05 GMT 2012 Rank 147 Aligned Residues 299 % Identity 9% Template c1xfdD_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:dipeptidyl aminopeptidase-like protein 6; PDBTitle: structure of a human a-type potassium channel accelerating factor2 dppx, a member of the dipeptidyl aminopeptidase family Resolution 3.00 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.				.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																														.	.																					.	.	.
Query SS confidence																														.	.																					.	.	.
Query Sequence		K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	.	.	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	.	.	.	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T	A
Query Conservation																														.	.																					.	.	.
Alig confidence																														.	.																					.	.	.																				.	.
Template Conservation																																																																										.	.
Template Sequence		L	R	A	I	R	Y	E	I	S	P	D	R	E	Y	A	L	F	S	Y	N	V	E	P	I	Y	Q	H	S	Y	T	G	Y	Y	V	L	S	K	I	P	H	G	D	P	Q	S	L	D	P	P	E	V	S	N	A	K	L	Q	Y	A	G	W	G	P	K	G	Q	Q	L	I	F	I	F	.	.	E	N	N	I	Y	Y
Template Known Secondary structure		T			S						T	T	S	S								S				S	S	S				B							S	S	S									T	T			S			B	S	B			B		S	S	T	T							.	.	T	T
Template Predicted Secondary structure																																																																										.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.			.	260	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.										.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	.	.	.	.	.	.	.	.	.	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																												.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	A	H	V	G	K	Q	A	I	R	V	V	S	T	G	K	E	G	V	I	Y	N	G	L	S	D	W	L	Y	E	E	E	I	L	K	T	H	I	A	H	W	W	S	P	D	G	T	R	L	A	Y	A	A	I	N	D	S	R	V	P	I	M	E	L	P	T	Y	T	G	S	I	Y	P	T	V	K	P	Y	H	Y
Template Known Secondary structure			S	S	S	S	S										B	T	T	T													T	T	S	S	S	S							T	T	S	S										T	T	S									S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
												165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.							.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.																.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.																.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	.	.	.	.	.	.	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	.	.	.	.	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L
Query Conservation		.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.																.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.																.	.	.	.
Template Conservation
Template Sequence		P	K	A	G	S	E	N	P	S	I	S	L	H	V	I	G	L	N	G	P	T	H	D	L	E	M	M	P	P	D	D	P	R	M	R	E	Y	Y	I	T	M	V	K	W	A	T	S	T	K	V	A	V	T	W	L	N	R	A	Q	N	V	S	I	L	T	L	C	D	A	T	T	G	V	C	T	K	K	H	E	D
Template Known Secondary structure			B	T	T	S												S	S	S	S												G	G	G	S	S									S	S	S	S									T	T	S										T	T	T
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
		225	.	.	.	.				230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.									.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure							.	.	.																																	.	.	.	.	.	.	.	.																.	.	.
Query SS confidence							.	.	.																																	.	.	.	.	.	.	.	.																.	.	.
Query Sequence		L	D	D	G	K	.	.	.	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	.	.	.	.	.	.	.	.	N	G	N	I	L	A	K	V	A	A	P	E	S	L	A	.	.	.	V	L	F	N	P	A	R	N	E	A	Y	V	T	H
Query Conservation							.	.	.																																	.	.	.	.	.	.	.	.																.	.	.
Alig confidence							.	.	.																																	.	.	.	.	.	.	.	.																.	.	.
Template Conservation
Template Sequence		E	S	E	A	W	L	H	R	Q	N	E	E	P	V	F	S	K	D	G	R	K	F	F	F	I	R	A	I	P	Q	G	G	R	G	K	F	Y	H	I	T	V	S	S	S	Q	P	N	S	S	N	D	N	I	Q	S	I	T	S	G	D	W	D	V	T	K	I	L	A	Y	D	E	K	G	N	K	I	Y	F	L	S
Template Known Secondary structure				S	S													T	T	S		S										S	S	S	S										S	S			S	S	S					B	S			S	S	S										T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
		291	.	.	.					.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.					.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure						.	.	.	.																				.	.	.	.
Query SS confidence						.	.	.	.																				.	.	.	.
Query Sequence		R	Q	A	G	.	.	.	.	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	.	.	.	.	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E
Query Conservation						.	.	.	.																				.	.	.	.
Alig confidence						.	.	.	.																				.	.	.	.
Template Conservation
Template Sequence		T	E	D	L	P	R	R	R	Q	L	Y	S	A	N	T	V	G	N	F	N	R	Q	C	L	S	C	D	L	V	E	N	C	T	Y	F	S	A	S	F	S	H	S	M	D	F	F	L	L	K	C	E	G	P	G	V	P	M	V	T
Template Known Secondary structure		S	S	S		T	T									S	S	T	T				B		S	S	T	T	S	S	S	S										T	T	S	S								S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions