Job Description P76116 Confidence 99.59% Date Wed Jan 25 15:21:05 GMT 2012 Rank 72 Aligned Residues 284 % Identity 14% Template c1r5mA_ PDB info PDB header:transcription Chain: A: PDB Molecule:sir4-interacting protein sif2; PDBTitle: crystal structure of the c-terminal wd40 domain of sif2 Resolution 1.55 Å

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		41	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.										.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure												.																																						.	.	.	.	.	.	.	.	.
Query SS confidence												.																																						.	.	.	.	.	.	.	.	.
Query Sequence		K	G	A	Y	E	M	A	Y	S	Q	.	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	.	.	.	.	.	.	.	.	.	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N
Query Conservation												.																																						.	.	.	.	.	.	.	.	.
Alig confidence												.											.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.																				.
Template Conservation																							.	.	.	.	.	.	.																																																	.
Template Sequence		D	N	I	V	S	S	T	W	N	P	L	D	E	S	I	L	A	Y	G	E	K	.	.	.	.	.	.	.	N	S	V	A	R	L	A	R	I	V	E	T	Y	W	K	L	T	I	I	A	E	L	R	H	P	F	A	L	S	T	N	Q	V	T	C	L	A	W	S	H	D	G	N	S	I	V	T	G	.	V	E	N
Template Known Secondary structure		S			S						S	S		T	T							T	.	.	.	.	.	.	.	B	T																													B									T	T	S	S						.		T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.																																																	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.								.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.																														.	.	.	.	160	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	I	S	G	I	G
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	L	R	L	W	N	K	T	G	A	L	L	N	V	L	N	F	H	R	A	P	I	V	S	V	K	W	N	K	D	G	T	H	I	I	S	M	D	V	E	N	V	T	I	L	W	N	V	I	S	G	T	V	M	Q	H	F	E	L	K	G	S	L	G	V	D	V	E	W	V	D	D	D	K	F	V	I	P	G
Template Known Secondary structure		S							T	T	S											S									T	T	S	S							T	T								T	T	T	T													B	S							T	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A
Query Conservation
Alig confidence																																																																.	.	.	.
Template Conservation																																																																.	.	.	.
Template Sequence		P	K	G	A	I	F	V	Y	Q	I	T	E	K	T	P	T	G	K	L	I	G	H	H	G	P	I	S	V	L	E	F	N	D	T	N	K	L	L	L	S	A	S	D	D	G	T	L	R	I	W	H	G	G	N	G	N	S	Q	N	C	F	Y	.	.	.	.	G	H	S	Q	S	I	V	S	A	S	W	V	G	D
Template Known Secondary structure		G	G	G							T	T		S	S		S							S	S									T	T	T	T							T	T	S							S	S	S	B	S		S					.	.	.	.			S	S									T	T
Template Predicted Secondary structure																																																																.	.	.	.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.					.	400	.	.	.	.	.	.	.	.	.	410	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence																																																		.																							.	.	.	.	.	.	.	.	.
Template Conservation																																																		.
Template Sequence		D	K	V	I	S	C	S	M	D	G	S	V	R	L	W	S	L	K	Q	N	T	L	L	A	L	S	I	V	D	G	V	P	I	F	A	G	R	I	S	Q	D	G	Q	K	Y	A	V	A	.	F	M	D	G	Q	V	N	V	Y	D	L	K	K	L	N	S	P	L	P	I	P	L	Y	A	S	Y	Q	S	S	Q	D
Template Known Secondary structure		T							T	T	S							T	T	T	T									T	T										T	T	S	S						.		T	T	S																									T	T
Template Predicted Secondary structure																																																		.
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460		.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	D	Y	I	F	D	L	S	W	N	C	A	G	N	K	I	S	V	A	Y	S	L	Q	E	G
Template Known Secondary structure												T	T	S	S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		506	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions