Job Description P76116 Confidence 99.57% Date Wed Jan 25 15:21:05 GMT 2012 Rank 75 Aligned Residues 299 % Identity 12% Template c1pi6A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:actin interacting protein 1; PDBTitle: yeast actin interacting protein 1 (aip1), orthorhombic crystal form Resolution 2.50 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.					.	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																																									.	.	.	.								.	.											.	.
Query SS confidence																																									.	.	.	.								.	.											.	.
Query Sequence		A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	.	.	.	.	T	Q	A	I	H	N	D	.	.	L	K	P	F	G	A	T	I	N	N	.	.	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T
Query Conservation																																									.	.	.	.								.	.											.	.
Alig confidence																					.	.	.	.	.	.	.	.													.	.	.	.								.	.											.	.									.
Template Conservation																					.	.	.	.	.	.	.	.																																														.
Template Sequence		T	T	H	L	S	Y	D	P	T	T	N	A	I	A	Y	P	C	G	K	.	.	.	.	.	.	.	.	S	A	F	V	R	C	L	D	D	G	D	S	K	V	P	P	V	V	Q	F	T	G	H	G	S	S	V	V	T	T	V	K	F	S	P	I	K	G	S	Q	Y	L	C	S	G	.	D	E	S	G	K	V	I
Template Known Secondary structure									T	T	T	T							T	T	.	.	.	.	.	.	.	.										S			S	S		S						T	T	T	T	S									S	S	T	T								.		T	T	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.																																														.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.									40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S
Query Conservation
Alig confidence																.
Template Conservation																.
Template Sequence		V	W	G	W	T	F	D	K	E	S	N	S	V	E	.	V	N	V	K	S	E	F	Q	V	L	A	G	P	I	S	D	I	S	W	D	F	E	G	R	R	L	C	V	V	G	E	G	R	D	N	F	G	V	F	I	S	W	D	S	G	N	S	L	G	E	V	S	G	H	S	Q	R	I	N	A	C	H	L	K	Q
Template Known Secondary structure									T	T	T	T				.											S	S									T	T	S										S	S		S						S	S	S			B		B				S		S	S									S
Template Predicted Secondary structure																.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	R	P	M	R	S	M	T	V	G	D	D	G	S	V	V	F	Y	Q	G	P	P	F	K	F	S	A	S	D	R	T	H	H	K	Q	G	S	F	V	R	D	V	E	F	S	P	D	S	G	E	F	V	I	T	V	G	S	D	R	K	I	S	C	F	D	G	K	S	G	E	F	L	K	Y	I	E	D	D	Q	E
Template Known Secondary structure		S	S	S								B	T	T							T	T	T	B								S	S	S		T	T		B								S	T	T									T	T								T	T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		275					.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.				.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.																																										.	.	.
Query SS confidence			.	.	.	.																																										.	.	.
Query Sequence		L	.	.	.	.	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	T	H	P	.	.	.	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E	A	T	Q	P	D	D
Query Conservation			.	.	.	.																																										.	.	.
Alig confidence			.	.	.	.																																										.	.	.
Template Conservation
Template Sequence		P	V	Q	G	G	I	F	A	L	S	W	L	D	S	Q	K	F	A	T	V	G	A	D	A	T	I	R	V	W	D	V	T	T	S	K	C	V	Q	K	W	T	L	D	K	Q	Q	L	G	N	Q	Q	V	G	V	V	A	T	G	N	G	R	I	I	S	L	S	L	D	G	T	L	N	F	Y	E	L	G	H	D	E
Template Known Secondary structure					S								S	S	S	S							T	T	T							T	T	T	T										T	T	S	G	G	G										T	T							T	T	S							T	T
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		348	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	K	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions