Job Description P76116 Confidence 99.53% Date Wed Jan 25 15:21:05 GMT 2012 Rank 87 Aligned Residues 244 % Identity 14% Template c1ijqA_ PDB info PDB header:lipid transport Chain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: crystal structure of the ldl receptor ywtd-egf domain pair Resolution 1.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	L	F	F	T	N	R	.	.	.	.	.	.	.	.	H	E	V	R	K	M	T	L	D	R	S	E	Y	T	S	L	I	P	N	L	R	N	V	V	A	L	D	T	E	V	A	S	N	R	I	Y	W	S	D	L	S	Q	R	M	I	C	S	T	Q	L	Y	D	T	V	I	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								B	.	.	.	.	.	.	.	.	S	S						T	T	S									S		S	S								T	T	T	T							T	T	T	T													.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		379	380	.	.	.	.	.									.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	S	R	D	I	Q	A	P	D	G	L	A	V	D	W	I	H	S	N	I	Y	W	T	D	S	V	L	G	T	V	S	V	A	D	T	K	G	V	K	R	K	T	L	F	R	E	N	G	S	K	P	R	A	I	V	V	D	P	V	H	G	F	M	Y	W	T	D	W	G	T	P	A	K	I	K	K	G	G
Template Known Secondary structure		.	.	.		S	S		S									T	T	T	T							T	T	T	T							T	T	S	S	S								T	T										T	T	T	T								S	S	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.			.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	S	L	.	.	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R
Query Conservation																																																																.	.
Alig confidence													.	.	.																																																	.	.
Template Conservation													.	.	.
Template Sequence		L	N	G	V	D	I	Y	S	L	V	T	.	.	.	E	N	I	Q	W	P	N	G	I	T	L	D	L	L	S	G	R	L	Y	W	V	D	S	K	L	H	S	I	S	S	I	D	V	N	G	G	N	R	K	T	I	L	E	D	E	K	R	L	A	H	P	F	S	L	A	V	F	E	D	K	V	F	W	T	D	I
Template Known Secondary structure		T	T	S									.	.	.	S	S		S									T	T	T	T							T	T	T	T							T	T	S		S								T	T	T	T	S	S								T	T							T
Template Predicted Secondary structure													.	.	.
Template SS confidence
		526	.	.	.	530	.	.	.	.	.	.				.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	.	T	H	P	N	S	L	A	L
Query Conservation																								.
Alig confidence																								.
Template Conservation
Template Sequence		I	N	E	A	I	F	S	A	N	R	L	T	G	S	D	V	N	L	L	A	E	N	L	L	S	P	E	D	M	V	L
Template Known Secondary structure		T	T	T							T	T	T										S		S
Template Predicted Secondary structure
Template SS confidence
		603	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions