Job Description P76116 Confidence 100.00% Date Wed Jan 25 15:21:05 GMT 2012 Rank 5 Aligned Residues 317 % Identity 17% Template c1gq1B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form Resolution 1.40 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.																		.	.	.
Query SS confidence																																																												.	.																		.	.	.
Query Sequence		V	S	S	F	S	T	Q	A	A	E	E	M	L	R	K	A	V	G	K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	.	.	V	T	Q	A	I	H	N	D	L	K	P	F	G	A	T	I	N	.	.	.
Query Conservation																																																												.	.																		.	.	.
Alig confidence																																								.	.	.	.	.	.	.														.	.																		.	.	.
Template Conservation																																								.	.	.	.	.	.	.
Template Sequence		I	A	L	I	D	G	A	T	Y	E	I	K	S	V	L	D	T	G	Y	A	V	H	I	S	R	L	S	A	S	G	R	Y	L	F	V	I	G	R	.	.	.	.	.	.	.	D	G	K	V	N	M	I	D	L	W	M	K	E	P	T	T	V	A	E	I	K	I	G	S	E	A	R	S	I	E	T	S	K	M	E
Template Known Secondary structure							T	T	T										S	S									T	T	S								T	.	.	.	.	.	.	.	T	S							T	T	S	S	S											S										S	T
Template Predicted Secondary structure																																								.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.								.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
			98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure		.																																	.
Query SS confidence		.																																	.
Query Sequence		.	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	.	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K
Query Conservation		.																																	.
Alig confidence		.																																	.
Template Conservation
Template Sequence		G	W	E	D	K	Y	A	I	A	G	A	Y	W	P	P	Q	Y	V	I	M	D	G	E	T	L	E	P	K	K	I	Q	S	T	R	G	M	T	Y	D	E	Q	E	Y	H	P	E	P	R	V	A	A	I	L	A	S	H	Y	R	P	E	F	I	V	N	V	K	E	T	G	K	I	L	L	V	D	Y	T	D	L	D
Template Known Secondary structure		T		T	T	T									T	T							T	T	T														T	T	T					S											S	S	S	S							T	T	T	T							T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		176	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure								.																								.																									.
Query SS confidence								.																								.																									.
Query Sequence		L	K	T	A	I	Q	.	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	.	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	.	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A
Query Conservation								.																								.																									.
Alig confidence								.																								.																									.
Template Conservation
Template Sequence		N	L	K	T	T	E	I	S	A	E	R	F	L	H	D	G	G	L	D	G	S	H	R	Y	F	I	T	A	A	N	A	R	N	K	L	V	V	I	D	T	K	E	G	K	L	V	A	I	E	D	T	G	G	Q	T	P	H	P	G	R	G	A	N	F	V	H	P	T	F	G	P	V	W	A	T	S	H	M	G	D
Template Known Secondary structure		S										T	T								T	T	S								G	G	G	T							T	T	T	T									S	S	S	S	B			T	T							T	T	T								B	S	S	S
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		253	.	.	.	.	.	.	260	.	.	.	.										.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.							.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.																									.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.																									.	.	.	.	.
Query Sequence		A	E	V	L	V	V	D	T	R	N	G	N	.	.	.	.	.	.	.	.	.	I	L	A	K	V	A	A	P	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	.	.	.	.	.	.	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	.	.	.	.	.
Query Conservation														.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.																									.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.																									.	.	.	.	.
Template Conservation
Template Sequence		D	S	V	A	L	I	G	T	D	P	E	G	H	P	D	N	A	W	K	I	L	D	S	F	P	A	L	G	G	G	S	L	F	I	K	T	H	P	N	S	Q	Y	L	Y	V	D	A	T	L	N	P	E	A	E	I	S	G	S	V	A	V	F	D	I	K	A	M	T	G	D	G	S	D	P	E	F	K	T	L	P
Template Known Secondary structure		S									T	T	T	S	T	T	T	B	T	S								S		S									T	T		S							T	T		S	S					T							G	G	G			S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
												313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	P	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E	A	T	Q	P	D	D	V	I	R	I	A
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.
Template Sequence		I	A	E	W	A	G	I	T	E	G	Q	P	R	V	V	Q	G	E	F	N	K	D	G	T	E	V	W	F	S	V	W	N	G	K	.	.	.	.	.	.	D	Q	E	S	A	L	V	V	V	D
Template Known Secondary structure							T			S	S											T	T	S	S										T	.	.	.	.	.	.	T	S
Template Predicted Secondary structure																																				.	.	.	.	.	.
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.							.	.	.	.	530	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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