Job Description P61175 Confidence 100.00% Date Thu Jan 5 12:07:19 GMT 2012 Rank 10 Aligned Residues 106 % Identity 30% Template c2zkrr_ PDB info PDB header:ribosomal protein/rna Chain: R: PDB Molecule:rna expansion segment es39 part i; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.																																	40	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	T	I	A	K	H	R	H	A	R	S	S	A	Q	K	V	R	L	V	A	D	L	I	R	G	K	K	V	S	Q	A	L	D	I	L	T	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	K	K	A	A	V	L	V	K	K
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	C	K	S	R	G	S	N	L	R	V	H	F	K	N	T	R	E	T	A	Q	A	I	K	G	M	H	I	R	K	A	T	K	Y	L	K	D	V	T	L	Q	K	Q	C	V	P	F	R	R	Y	N	G	G	V	G	R	C	A	Q	A	K	Q	W	G	W	T	Q	G	R	W	P	K	K	S	A	E	F	L	L	H
Template Known Secondary structure									S			S													T	T	S	B														T	S	S					S	S	S		T	T			B			S	T	T	S		S		S	B
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	E	S	A	I	A	N	A	E	H	N	D	G	A	D	I	D	D	L	K	V	T	K	I	F	V	D	E	G	P	S	M	K	R	I	M	P	R	A	K	G	R	A	D	R	I	L	K	R	T	S	H	I	T	V	V	V	S	D	R
Query Conservation
Alig confidence														.																.																			.
Template Conservation														.																.																			.
Template Sequence		M	L	K	N	A	E	S	N	A	E	L	K	.	G	L	D	V	D	S	L	V	I	E	H	I	Q	V	N	.	A	P	K	M	R	R	R	T	Y	R	A	H	G	R	I	N	P	Y	.	M	S	S	C	H	I	E	M	I	L	T	E	K
Template Known Secondary structure														.	T	S		T	T	T										.											T	T	T						.
Template Predicted Secondary structure														.																.																			.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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