 |
Job Description | P33667 | Confidence | 91.14% | Date | Thu Jan 5 11:52:34 GMT 2012 |
Rank | 273 | Aligned Residues | 104 |
% Identity | 16% | Template | c3gmtB_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:adenylate kinase; |
PDBTitle: crystal structure of adenylate kinase from burkholderia pseudomallei
|
Resolution | 2.10 Å |
|
 |
  |   |
145 | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 170 | . | . | |
|
|
. | . | . | . | . | . | . | 180 | . | |
|
|
|
|
|
. | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
| . | . | . | . | . |
|
|
|
|  |  |  |  |  | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | L | I | G | G | C | T | G | S | G | K | T | L | L | V | Q | Q | Q | P | . |
. |
. |
. |
. |
N | G | V | D | L | E | G | L | A | . |
. |
. |
R | H | R | G | S | A | F | G | R | . |
. |
. |
. |
. |
. |
T | L | Q | P | Q | L | S | Q | A | S | F | E | N | L | L | A | A | E | M | L | K | T | D | A | R | Q | N | L | R |
Query Conservation |   |
  |
|
|   |
|   |
|
|   |
|
|
|   |
|
|   |   |   |   | . | . | . | . | . |   |
|
|
|
|
|
|
|
| . | . | . |   |
|
|
|
|   |
|
|   | . | . | . | . | . | . |   |   |   |   |
|
|
|
|
|   |
|
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
Template Conservation |   |
|   |
|   |
|   |
|
|
|
|
|
|
|   |
|   |   |
|
|   |   |   |
|   |   |   |
|
|   |   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
| . | . |
Template Sequence |   |
L | I | L | L | G | A | P | G | A | G | K | G | T | Q | A | N | F | I | K | E | K | F | G | I | P | Q | I | S | T | G | D | X | L | R | A | A | V | K | A | G | T | P | L | G | V | E | A | K | T | Y | X | D | E | G | K | L | V | P | D | S | L | I | I | G | L | V | K | E | R | L | K | E | A | D | C | A | N | G | . |
. |
Template Known Secondary structure |   |
 |  |  |  |  |
| T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
|  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | T | T | S | G | G | G | T | T |
| . | . |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | |
|
  |
  |   |
211 | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | |
. | . | . | . | . | . | . | . | 250 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|
|  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  | . |  |  |
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | W | V | L | E | D | E | S | R | M | I | G | S | N | H | L | P | E | C | L | R | E | R | M | T | Q | A | A | I | A | V | . |
V | E | D | P | F | E | I | R | L | E | R | L | N |
Query Conservation |   |
  |   |   |
|
|   |
|
|   |   |
|
|   |   |   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |
|   | . |
|   |   |   |   |
|   |
|
|   |   |
|   |
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. |   |
|
|
|
|
|
|
|   |   |   |
|   | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |   |
|   |   |
|   |   |
Template Sequence |   |
. |
Y | L | F | D | G | F | P | R | T | I | A | Q | A | . |
. |
. |
D | A | X | K | E | A | G | V | A | I | D | Y | V | L | E | I | D | V | P | F | S | E | I | I | E | R | X | S |
Template Known Secondary structure |   |
. |  |  |  |  | S |
|
|
| S |  |  |  |  | . | . | . |  |  |  |  |  | T | T |
|
|
| S |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
. |  |  |  |  |
|
|
|
|
|  |  |  |  | . | . | . |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | |
|
|
. | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|