 |
Job Description | P33667 | Confidence | 89.24% | Date | Thu Jan 5 11:52:34 GMT 2012 |
Rank | 321 | Aligned Residues | 75 |
% Identity | 28% | Template | c3cmvG_ |
PDB info |
PDB header:recombination | Chain: G: PDB Molecule:protein reca; |
PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures
|
Resolution | 4.30 Å |
|
 |
  |   |
139 | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
160 | . | . | . | . | . | |
|
. | . | . | . | 170 | . | |
|
|
|
|
. | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  | . | . | . | . | . | . | . | . |  |
|
|
|
|
| . | . |
|
|  |  |  |  | . | . | . | . | . |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
| . |
. |
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | A | Q | K | P | I | V | L | I | G | G | C | T | G | S | G | K | T | L | L | V | . |
. |
. |
. |
. |
. |
. |
. |
Q | Q | Q | P | N | G | . |
. |
V | D | L | E | G | L | . |
. |
. |
. |
. |
A | R | H | R | G | S | A | F | G | R | T | L | Q | P | Q | L | S | Q | A | S | F | E | N | L | L | A | A | E | M | L | K | T |
Query Conservation |   |
  |   |   |   |   |   |   |
|
|   |
|   |
|
|   |
|
|
|   |
|
| . | . | . | . | . | . | . | . |   |   |   |   |   |
| . | . |
|
|
|
|
|
| . | . | . | . | . |
|   |
|
|
|
|   |
|
|   |   |   |   |   |
|
|
|
|
|   |
|
|
|   |
|   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
| . | . |
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   | . |
Template Sequence |   |
L | P | M | G | R | I | V | E | I | Y | G | P | E | S | S | G | K | T | T | L | T | L | Q | V | I | A | A | A | Q | R | E | G | K | T | C | A | F | I | D | A | E | H | A | L | D | P | I | Y | A | R | K | L | G | V | D | I | D | N | L | L | C | S | Q | P | D | T | G | E | Q | A | L | E | I | C | D | A | L | A | R | . |
Template Known Secondary structure |   |
 |  | T | T | S |  |  |  |  |  |
|
| T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |
|
|  |  |  |  |
| T | T | S |
|
|
|  |  |  |  |  |  |  | T |
|
| G | G | G |
|
|
| B |
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | . |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3056 | . | . | . | 3060 | . | . | . | . | . | . | . | . | . | 3070 | . | . | . | . | . | . | . | . | . | 3080 | . | . | . | . | . | . | . | . | . | 3090 | . | . | . | . | . | . | . | . | . | 3100 | . | . | . | . | . | . | . | . | . | 3110 | . | . | . | . | . | . | . | . | . | 3120 | . | . | . | . | . | . | . | . | . | 3130 | . | . | . | . | |
  |
  |   |
204 | . | . | . | . | . | 210 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | A | R | Q | N | L | R | L | W | V | L | E | D | E |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|
|   |
|
Alig confidence |   |
. | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . |   |   |   |   |   |   |   |   |   |
|
|
Template Sequence |   |
. |
. |
. |
S | G | A | V | D | V | I | V | V | D | S |
Template Known Secondary structure |   |
. | . | . | S | S | S |
|
|  |  |  |  | T | T |
Template Predicted Secondary structure |   |
. | . | . |
|
|
|
|
|  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
3135 | . | . | . | . | 3140 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|