Job Description P33667 Confidence 93.24% Date Thu Jan 5 11:52:34 GMT 2012 Rank 186 Aligned Residues 101 % Identity 22% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.											.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.													.	.	.										.	.	170	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.
Query Sequence		K	A	L	R	Q	T	A	I	Q	A	T	I	E	L	A	Q	K	P	.	.	.	.	.	.	.	.	.	.	I	V	L	I	G	G	C	T	G	S	G	K	T	L	L	V	Q	Q	Q	P	N	.	.	.	.	.	.	.	.	.	.	.	.	G	V	D	.	.	.	.	.	.	.	.	.	L	E	G	L	A	R	H
Query Conservation																				.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	M	I	Q	H	A	V	F	K	E	L	V	K	L	V	D	P	G	V	K	A	W	T	P	T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K
Template Known Secondary structure																											S	S								S	T	T	S	S															T	T											S	S	S
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		175	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		R	G	S	A	.	F	G	R	T	L	Q	P	Q	L	S	Q	A	S	F	E	N	L	L	A	A	E	M	L	K	T	D	A	R	Q	N	L	R	L	W	V	L	E	D	E	S	R	M	I	G	S	N	H	L	P	E	C	L	R	E	R	M	T	Q
Query Conservation						.
Alig confidence						.																											.	.	.	.	.	.	.								.	.	.
Template Conservation																																	.	.	.	.	.	.	.								.	.	.
Template Sequence		A	R	I	P	F	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S	E	G	V	E	K	F	K	N	E	N	F	E	.	.	.	.	.	.	.	I	I	I	V	D	T	S	.	.	.	G	R	H	K	Q	E	D	S	L	F	E	E	M	L	Q
Template Known Secondary structure			T										S																T	T			.	.	.	.	.	.	.								.	.	.				T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.								.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.								.	.	.	.	190	.	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions