Job Description P33667 Confidence 93.20% Date Thu Jan 5 11:52:34 GMT 2012 Rank 188 Aligned Residues 86 % Identity 28% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.														.	.	.										.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.											.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.											.
Query Sequence		Q	K	P	I	V	L	I	G	G	C	T	G	S	G	K	T	L	L	V	Q	Q	Q	P	N	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	D	.	.	.	.	.	.	.	.	.	L	E	G	L	A	R	H	R	G	S	.	A	F	G	R	T	L	Q	P	Q	L	S	Q	A	S	F	E	N	L	L	A
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.											.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A	A	L	K	E
Template Known Secondary structure		S	S								S	S	S	S	S	S	T	T	T										T	S	S	S					B						S	S	S		S											T	T							S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	M	L	K	T	D	A	R	Q	N	L	R	L	W	V	L	E	D	E	S	R	M	I	G	S	N	H	L	P	E	C	L	R	E	R	M	T	Q
Query Conservation
Alig confidence									.	.	.	.	.	.	.								.	.	.
Template Conservation									.	.	.	.	.	.	.								.	.	.
Template Sequence		A	K	L	K	F	Y	D	.	.	.	.	.	.	.	V	L	L	V	D	T	A	.	.	.	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q
Template Known Secondary structure					T	T		S	.	.	.	.	.	.	.								.	.	.				S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.								.	.	.
Template SS confidence
		179	180	.	.	.	.	.								.	.	.	.	190	.	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions