Job Description P33667 Confidence 94.11% Date Thu Jan 5 11:52:34 GMT 2012 Rank 155 Aligned Residues 101 % Identity 21% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140											.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.													.	.	.										.	.	170	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.
Query Sequence		K	A	L	R	Q	T	A	I	Q	A	T	I	E	L	A	.	.	.	.	.	.	.	.	.	.	Q	K	P	I	V	L	I	G	G	C	T	G	S	G	K	T	L	L	V	Q	Q	Q	P	N	.	.	.	.	.	.	.	.	.	.	.	.	G	V	D	.	.	.	.	.	.	.	.	.	L	E	G	L	A	R	H
Query Conservation																	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	V	I	L	A	T	V	Y	E	A	L	K	E	A	L	G	G	E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K
Template Known Secondary structure																T	T	S	S								S	S									T	T	S	S															T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		175	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		R	G	S	.	A	F	G	R	T	L	Q	P	Q	L	S	Q	A	S	F	E	N	L	L	A	A	E	M	L	K	T	D	A	R	Q	N	L	R	L	W	V	L	E	D	E	S	R	M	I	G	S	N	H	L	P	E	C	L	R	E	R	M	T	Q
Query Conservation					.
Alig confidence					.																												.	.	.	.	.	.	.								.	.	.
Template Conservation																																	.	.	.	.	.	.	.								.	.	.
Template Sequence		V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	.	.	.	.	.	.	.	L	I	L	V	D	T	A	.	.	.	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R
Template Known Secondary structure			T								T	T																		T		S	.	.	.	.	.	.	.								.	.	.			S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.								.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.								.	.	.	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions