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Job DescriptionP33667
Confidence95.82%DateThu Jan 5 11:52:34 GMT 2012
Rank98Aligned Residues94
% Identity15%Templatec1xwiA_
PDB info PDB header:protein transportChain: A: PDB Molecule:skd1 protein; PDBTitle: crystal structure of vps4b
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   123......130........ .140.........150.........160.........170.........180.........190.
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Query Sequence  GGYKALRQTAIQATIE. . . . . . . . . . . LAQKPIVLIGGCTGSGKTLLVQQQPNGVDLEGLARHRGSAFGRTLQPQLSQAS
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Template Sequence  AGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGE. . . . .
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   137..140.........150.........160.........170.........180.........190.........200.........210.
 
   192.......200.........210.........220...
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Query Sequence  FENLLAAEMLKTDARQNLRLWVLEDESRMIGS
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Template Sequence  SEKLVKNLFQLARENKP. . SIIFIDEIDSLCG
Template Known Secondary structure 
TSS..TTTGGG
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   212.......220........ .230.........240.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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