Job Description P33667 Confidence 95.82% Date Thu Jan 5 11:52:34 GMT 2012 Rank 98 Aligned Residues 94 % Identity 15% Template c1xwiA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:skd1 protein; PDBTitle: crystal structure of vps4b Resolution 2.80 Å

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		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.												.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	G	Y	K	A	L	R	Q	T	A	I	Q	A	T	I	E	.	.	.	.	.	.	.	.	.	.	.	L	A	Q	K	P	I	V	L	I	G	G	C	T	G	S	G	K	T	L	L	V	Q	Q	Q	P	N	G	V	D	L	E	G	L	A	R	H	R	G	S	A	F	G	R	T	L	Q	P	Q	L	S	Q	A	S
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	I	K	F	P	H	L	F	T	G	K	R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	N	N	S	T	F	F	S	I	S	S	S	D	L	V	S	K	W	L	G	E	.	.	.	.	.
Template Known Secondary structure			S																			G	G	G	S		T	T					S						S	S	S	S	S													T	T	S										S	S			S	S			S	.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	N	L	L	A	A	E	M	L	K	T	D	A	R	Q	N	L	R	L	W	V	L	E	D	E	S	R	M	I	G	S
Query Conservation
Alig confidence																			.	.
Template Conservation																			.	.
Template Sequence		S	E	K	L	V	K	N	L	F	Q	L	A	R	E	N	K	P	.	.	S	I	I	F	I	D	E	I	D	S	L	C	G
Template Known Secondary structure																T	S	S	.	.							T	T	T	G	G	G
Template Predicted Secondary structure																			.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.	.	.	.	240	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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