Job Description P33667 Confidence 92.53% Date Thu Jan 5 11:52:34 GMT 2012 Rank 214 Aligned Residues 86 % Identity 26% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.													.	.	.										.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.										.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.										.
Query Sequence		Q	K	P	I	V	L	I	G	G	C	T	G	S	G	K	T	L	L	V	Q	Q	Q	P	N	.	.	.	.	.	.	.	.	.	.	.	.	G	V	D	.	.	.	.	.	.	.	.	.	L	E	G	L	A	R	H	R	G	.	S	A	F	G	R	T	L	Q	P	Q	L	S	Q	A	S	F	E	N	L	L	A	A
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.										.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.										.
Template Conservation
Template Sequence		L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F
Template Known Secondary structure		S	S								S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S											T	T							S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		E	M	L	K	T	D	A	R	Q	N	L	R	L	W	V	L	E	D	E	S	R	M	I	G	S	N	H	L	P	E	.	.	C	L	R	E	R	M	T	Q
Query Conservation																																.	.
Alig confidence								.	.	.	.	.	.	.								.	.	.								.	.
Template Conservation								.	.	.	.	.	.	.								.	.	.
Template Sequence		V	K	N	K	M	D	.	.	.	.	.	.	.	I	I	I	V	D	T	A	.	.	.	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E
Template Known Secondary structure				T	T		S	.	.	.	.	.	.	.								.	.	.		S			S	S	T
Template Predicted Secondary structure								.	.	.	.	.	.	.								.	.	.
Template SS confidence
		175	.	.	.	.	180								.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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