Job Description P77425 Confidence 100.00% Date Thu Jan 5 12:29:04 GMT 2012 Rank 24 Aligned Residues 337 % Identity 15% Template c3tx8A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of a succinyl-diaminopimelate desuccinylase (arge)2 from corynebacterium glutamicum atcc 13032 at 2.97 a resolution Resolution 2.97 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		Q	A	I	E	E	T	L	P	W	L	S	S	F	G	A	D	P	A	G	G	M	T	R	L	L	Y	S	P	E	W	L	E	T	Q	Q	Q	F	K	K	R	M	A	A	S	G	L	E	T	R	F	.	.	D	E	V	G	N	L	Y	G	R	L	N	G	T	E	Y	P	Q	E	V	V	L	S	G	S	H	I	D	T
Query Conservation																																																				.	.
Alig confidence																				.	.	.	.	.	.	.																										.	.																.	.
Template Conservation																				.	.	.	.	.	.	.																																											.	.
Template Sequence		D	L	L	G	D	P	I	V	L	T	Q	R	L	V	D	I	P	S	.	.	.	.	.	.	.	P	S	G	Q	E	K	Q	I	A	D	E	I	E	D	A	L	R	N	L	N	L	P	G	V	E	V	F	R	F	N	N	N	V	L	A	R	T	N	R	G	L	A	.	.	S	R	V	X	L	A	G	H	I	D	T
Template Known Secondary structure					S											S	S			.	.	.	.	.	.	.	B	T	T		T													T	T	T		T	T							T	T											S	.	.											B
Template Predicted Secondary structure																				.	.	.	.	.	.	.																																											.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.								.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80
		85	.	.																.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	N	L	D	G	Q	F	G	A	L	A	A	W	L	A	I	D	W	L	K	T	Q	Y	G	A	P	L	R	T	V	E	V	V	A	M	A	E	E	E	G	S	R	F	P	Y	V	F	W	G	S	K	N	I	F	G	L	A	N	P	D	D
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		V	P	I	A	D	N	L	P	S	R	V	E	D	G	I	X	Y	G	C	G	T	V	D	X	K	S	G	L	A	V	Y	L	H	T	F	A	T	L	A	T	S	T	E	L	K	H	D	L	T	L	I	A	Y	E	C	E	E	V	A	D	H	L	N	G	L	G	H	I	R	D	E	H	P	.	.	.	.	.	.	.
Template Known Secondary structure		S				S			S					S	S				S	S	S	T	T	T	T															T	S		T	T			S											S	S		T	T	S											G	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	N	I	C	D	A	K	G	N	S	F	V	D	A	M	K	A	C	G	F	T	L	P	N	A	P	L	T	P	R	Q	D	I	K	A	F	V	E	L	H	I	E	Q	G	C	V	L	E	S	N	G	Q	S	I	G	V	V	N	A	I	V	G	Q	R	R	Y	T	V	T	L	N	G	E	S	N	H	A	G	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	W	L	A	A	D	L	A	L	L	G	E	P	T	G	G	W	I	E	A	G	C	Q	G	N	L	R	I	K	V	T	A	H	G	V	R	A	H	.	.	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G			S									T	T					S	B													B			B	.	.	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.
Template SS confidence
																																									154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.							.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.
Query Sequence		T	P	M	G	Y	R	R	D	T	V	Y	A	F	S	R	I	C	H	Q	S	V	E	K	A	K	R	M	G	D	.	.	.	.	.	.	P	L	V	L	T	F	G	K	V	E	P	R	P	N	T	V	N	V	V	P	G	K	T	T	F	T	I	D	C	R	H	T	D	A	A	V	L	R	D	F	T	Q	Q	L	E
Query Conservation																															.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.											.
Template Conservation																																															.
Template Sequence		A	R	S	W	L	G	D	N	A	X	H	K	L	S	P	I	I	S	K	V	A	A	Y	K	A	A	E	V	N	I	D	G	L	T	Y	R	E	G	L	N	I	V	F	C	E	.	S	G	V	A	N	N	V	I	P	D	L	A	W	X	N	L	N	F	R	F	A	P	N	R	D	L	N	E	A	I	E	H	V	V
Template Known Secondary structure		T	S	G	G	G	S	B		T	G	G	G	G																		T	T														.			S	B	T	T	B			S												T	T	S
Template Predicted Secondary structure																																															.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	M	R	A	I	C	D	E	M	D	I	G	I	D	I	D	L	W	M	D	E	E	P	V	P	M	N	K	E	L	V	A	T	L	T	E	L	C	E	R	E	K	L	N	Y	R	V	M	H	S	G	A	G	H	D	A	Q	I	F	A	P	R	V	P	T	C	M	I	F	I	P	S	I	N	G	I	S	H	N
Query Conservation
Alig confidence										.															.	.	.	.
Template Conservation										.															.	.	.	.
Template Sequence		E	T	L	E	L	D	G	Q	.	D	G	I	E	W	A	V	E	D	G	A	G	G	A	.	.	.	.	L	P	G	L	G	Q	Q	V	T	S	G	L	I	D	A	V	G	R	E	K	I	R	A	K	F	G	W	T	D	V	S	R	F	S	A	X	G	I	P	A	L	N	F	G	A	G	D	P	S	F	A	H	K
Template Known Secondary structure				T	T	T	T	T	S	.	T	T												B	.	.	.	.				T	T	S												G	G	G						S			T						T	T	T								S	S		S	S	S	S	S
Template Predicted Secondary structure										.															.	.	.	.
Template SS confidence
		272	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.					.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	E	R	T	N	I	T	D	L	A	E	G	V	K	T	L	A	L	M	L	Y	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	D	E	Q	C	P	V	E	Q	I	T	D	V	A	A	I	L	K	Q	Y	L	S	E
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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