Job Description P77425 Confidence 99.89% Date Thu Jan 5 12:29:04 GMT 2012 Rank 47 Aligned Residues 233 % Identity 20% Template c3t6mA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:succinyl-diaminopimelate desuccinylase; PDBTitle: crystal structure of the catalytic domain of dape protein from2 v.cholerea in the zn bound form Resolution 1.65 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60				.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence		E	T	L	P	W	L	S	S	F	G	A	D	P	A	G	G	M	T	R	L	L	Y	S	P	E	W	L	E	T	Q	Q	Q	F	K	K	R	M	A	A	S	G	L	E	T	R	F	D	E	V	G	.	.	.	N	L	Y	G	R	L	N	G	T	E	Y	P	Q	E	V	V	L	S	G	S	H	I	D	T	V	V	N
Query Conservation																																																				.	.	.
Alig confidence																.	.	.	.	.	.	.																														.	.	.							.	.	.
Template Conservation																.	.	.	.	.	.	.																																							.	.	.
Template Sequence		P	V	L	A	L	A	K	E	L	I	S	R	Q	S	.	.	.	.	.	.	.	V	T	P	A	D	A	G	C	Q	D	L	M	I	E	R	L	K	A	L	G	F	E	I	E	S	M	V	F	E	D	T	T	N	F	W	A	R	R	.	.	.	G	T	Q	S	P	L	F	V	F	A	G	H	T	D	V	V	P	A
Template Known Secondary structure												T	S			.	.	.	.	.	.	.	B	T	T			T	T											T	T	T									T	T									.	.	.		S	S	S											B
Template Predicted Secondary structure																.	.	.	.	.	.	.																																							.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.								.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.				.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
																								88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	N	L	D	G	Q	F	G	A	L	A	A	W	L	A	I	D	W	L	K	T	Q	Y	G	A	P	L	R	T	V	E	V	V	A	M	A	E	E	E	G	S	R	F	P	Y	V	F	W	G	S	K	N	I	F	G	L	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	P	L	S	Q	W	H	T	P	P	F	E	P	T	V	I	D	G	F	L	H	G	R	G	A	A	D	M	K	G	S	L	A	C	M	I	V	A	V	E	R	F	I	A	E	H	P	D	H	Q	G	S	I	G	F	L	I	T	S	D	E	E	G	I	N	G	T	V	R	V	V	E	T	L	M	A	R	N	E	L
Template Known Secondary structure				G	G	G		S	S		T	T	S					T	T				S	T	T	T	T	T	T																			T	T		S	S								S		T	T															T	T
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	D	D	V	R	N	I	C	D	A	K	G	N	S	F	V	D	A	M	K	A	C	G	F	T	L	P	N	A	P	L	T	P	R	Q	D	I	K	A	F	V	E	L	H	I	E	Q	G	C	V	L	E	S	N	G	Q	S	I	G	V	V	N	A	I	V	G	Q	R	R	Y	T	V	T	L	N	G	E	S	N
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	M	C	I	V	G	E	P	S	S	T	L	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									S			B	S	S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	G	T	T	P	M	G	Y	R	R	D	T	V	Y	A	F	S	R	I	C	H	Q	S	V	E	K	A	K	R	M	G	D	P	L	V	L	T	F	G	K	V	E	P	R	P	N	T	V	N	V	V	P	G	K	T	T	F	T	I	D	C	R	H	T	D	A	A	V	L	R	D	F	T	Q	Q	L	E	N	D
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	A	I	C	D	E	M	D	I	G	I	D	I	D	L	W	M	D	E	E	P	V	P	M	N	K	E	L	V	A	T	L	T	E	L	C	E	R	E	K	L	N	Y	R	V	M	H	S	G	A	G	H	D	A	Q	I	F	A	P	R	V	P	T	C	M	I	F	I	P	S	I	N	G	I	S	H	N	P	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																																																																			.
Template Conservation		.	.	.	.	.	.	.	.																																																																			.
Template Sequence		.	.	.	.	.	.	.	.	G	D	V	V	K	N	G	R	R	G	G	G	F	L	T	D	T	G	E	L	L	A	A	V	V	A	A	V	E	E	V	N	H	Q	A	P	A	L	L	T	T	G	G	T	S	D	G	R	F	I	A	Q	M	G	A	Q	V	V	E	L	G	P	V	N	A	T	.	I	H	K	V	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	T	S							G	G	G	G	T	S																			S	S						S	S		S											T								S	B		T	T	.	T	T	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																																																			.
Template SS confidence
										172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	T	N	I	T	D	L	A	E	G	V	K	T	L	A	L	M	L	Y	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	C	V	R	I	A	D	L	E	K	L	T	D	M	Y	Q	K	T	L	N	H	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions