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Job DescriptionP77425
Confidence100.00%DateThu Jan 5 12:29:04 GMT 2012
Rank31Aligned Residues311
% Identity14%Templatec3kl9F_
PDB info PDB header:hydrolaseChain: F: PDB Molecule:glutamyl aminopeptidase; PDBTitle: crystal structure of pepa from streptococcus pneumoniae
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   12.......20.........30.........40.........50.........60.........70.........80.......
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Query Sequence  TLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVVLSGSHIDTVVN. . . .
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Template Sequence  LFSKIKEVTELAA. . . . . . . VSGHEAPVRAYLREKLTPHVDEVVTDGLGGIFGIKHSEAVDAPRVLVASHMDEVGFMVSE
Template Known Secondary structure  TS

.......BTT

GGG
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   88.90.........100.........110.........120.........130.........140.........150......
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Query Sequence  . . . . . . . . . . . GGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDA
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Template Sequence  IKPDGTFRVVEIGGWNPMVV. . . . . . . . . . . . . . . . . SSQRFKLLTRDGHEIPVISGPAIA. . . . . . . . . . . . . . . . . . .
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TTS
S


GGG
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   77..80.........90...... ...100.........110.........120
 
   157..160.........170.........180.........190.........200.........210.........220.........230......
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Query Sequence  KGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DIVFDGGFADKAEAESFGIRPGDTIVPDSSAILTANEKNIISKA. . . . W
Template Known Secondary structure  ...............................GS



SSTT

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   136...140.........150.........160.........170......... 180
 
   237..240.........250.........260.........270.........280.........290.........300.........310......
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Query Sequence  DTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIG
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Template Sequence  DNRYGVLMVSELAEALSGQKLGNELYLGSNVQEEVGLRGAHTSTTKFDPEVFLAVDCSPA. . . . . . . . . GDVYGGQGKIG
Template Known Secondary structure  TSS


SSS

TTTS

S
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TT
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   181........190.........200.........210.........220.........230.........240 .........250.
 
   317..320.........330.........340.........350.........360.... .....370.........380.........390...
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Query Sequence  IDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDAQIFA. . . PRVPTCMIFIPSINGISHNPAERTNITDL
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Template Sequence  DGTLIRFYDPGHLLLPGMKDFLLTTAEEAGIKYQYYCGKGGTDAGAAHLKNGGVPSTTIGVCAR. . YIHSHQTLYAMDDF
Template Known Secondary structure  S
TT

TT


SS

TTTSTT


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   252.......260.........270.........280.........290.........300.........310..... ....320.........
 
   394.....400.........410.
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Query Sequence  AEGVKTLALMLYQLAWQK
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Template Sequence  LEAQAFLQALVKKLDRST
Template Known Secondary structure 
S
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   330.........340.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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