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Job DescriptionP77425
Confidence100.00%DateThu Jan 5 12:29:04 GMT 2012
Rank29Aligned Residues352
% Identity16%Templatec3khzA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:putative dipeptidase sacol1801; PDBTitle: crystal structure of r350a mutant of staphylococcus aureus2 metallopeptidase (sapep/dape) in the apo-form
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20. ........30.........40.........50.........60.........70.........
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Query Sequence  ITHFRQAIEETLPWLSSFGA. . DPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVVLSG
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Template Sequence  VQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVDHIAGRIEA. . . GKGNDVLGIL
Template Known Secondary structure  TTTS

B

TTS

SSSTT
TT

TTT...
SS
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   6...10.........20.........30.........40.........50.........60.........70.. .......80..
 
   80........ .90.........100.........110.........120.........130.........
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Query Sequence  SHIDTVVNG. . . . . . . . . . . . . . . . . . . . GNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSK
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Template Sequence  CHVDVVPAGDGWDSNPFEPVVTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDW. . . . . KCTD
Template Known Secondary structure 

B



TT
SS
TTS

SSSTTSTTTTT


SS

TT


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TTS
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   83......90.........100.........110.........120.........130.........140.........150... ....
 
   140.........150.........160.........170.........180.........190.........200..
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Query Sequence  NIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQ. . . . . . . . . . . . . . . . .
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Template Conservation                 
       
  
                           
         
   
           
Template Sequence  RYFKTEEMPTLGFAPDAEFPCIHGEKGITTFDLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQ
Template Known Secondary structure  S


S
TT
SS
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B










S
SSSB


SS
S
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   158.160.........170.........180.........190.........200.........210.........220.........230.......
 
   203......210.........220.........230.........240.........250....
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Query Sequence  . . . . . . . . SIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAK. . . . . . . . . . . . . . . . . . . .
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Template Sequence  DFEYFLEQNHLQGDSTVDSGILVLTVEGKAVH. . GMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEK
Template Known Secondary structure  TT

TT
B

B..TTS
TTSB
TTS
B
TTT
TTSGG
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   238.240.........250.........260......... 270.........280.........290.........300.........310.....
 
   255....260.........270.........280.........290.........300.........310.........320.......
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Query Sequence  . . . . . . . RMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEP
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Template Sequence  MGMKFHTDVMGDVTTNIGVIT. . . . . . YDNENAGLFGINLAYPEGFEFEKAMDRFANEIQ. . . . QYGFEVKLGKVQPPHY
Template Known Secondary structure  GT


TTT
......TTT
TT

TG....GGT

B
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   316...320.........330...... ...340.........350.........360......... 370.........380.....
 
   328.330.........340.........350.........360.........370.........380.........390.........400.......
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Query Sequence  VPMNKELVATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQL
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Template Sequence  VDKNDPFVQKLVTAYRN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QTHQKNEYITKKQLFNATSIYLEAIYSL
Template Known Secondary structure 
GGG
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SS
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   386...390.........400.. .......410.........420.........430
 
   408
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Query Sequence  A
Query Conservation 
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Template Conservation   
Template Sequence  C
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   466
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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