Job Description P77425 Confidence 100.00% Date Thu Jan 5 12:29:04 GMT 2012 Rank 27 Aligned Residues 323 % Identity 18% Template c3ct9B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:acetylornithine deacetylase; PDBTitle: crystal structure of a putative zinc peptidase (np_812461.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.31 a resolution Resolution 2.31 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	H	F	R	Q	A	I	E	E	T	L	P	W	L	S	S	F	G	A	D	P	A	G	G	M	T	R	L	L	Y	S	P	E	W	L	E	T	Q	Q	Q	F	K	K	R	M	A	A	S	G	L	E	T	R	F	D	E	V	G	N	L	Y	G	R	L	N	G	T	E	Y	P	Q	E	V	V	L	S	G	S	H
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.																										.	.																	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.																										.	.																	.
Template Sequence		I	P	T	X	T	A	E	A	V	S	L	L	K	S	L	I	S	I	.	.	.	.	.	.	.	.	.	.	P	S	I	S	R	E	E	T	Q	A	A	D	F	L	Q	N	Y	I	E	A	E	G	X	Q	T	.	.	G	R	K	G	N	N	V	W	C	L	S	P	X	F	D	K	.	P	T	I	L	L	N	S	H
Template Known Secondary structure																			S	.	.	.	.	.	.	.	.	.	.			B	T	T															T	T	T				.	.				T	T							T	T				.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.																										.	.																	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.											.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.
		82	.	.	.	.	.																	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	D	T	V	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	N	L	D	G	Q	F	G	A	L	A	A	W	L	A	I	D	W	L	K	T	Q	Y	G	A	P	L	R	T	V	E	V	V	A	M	A	E	E	E	G	S	R	F	P	Y	V	F	W	G	S	K	N	I	F	G	L	A
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.																										.	.	.	.	.	.	.
Template Conservation																																																.	.																										.	.	.	.	.	.	.
Template Sequence		I	D	T	V	K	P	V	K	D	P	F	T	P	R	E	E	N	G	K	L	Y	G	L	G	S	N	D	A	G	A	S	V	V	S	L	L	Q	V	F	L	Q	L	C	R	T	S	.	.	Q	N	Y	N	L	I	Y	L	A	S	C	E	E	E	V	S	G	K	E	G	I	E	S	V	L	.	.	.	.	.	.	.
Template Known Secondary structure				B							S	S						T	T					T	T	T	T	T	T															T	T	S		.	.		S	S										T	T	T	T		T	T	S	G	G	G	T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.																										.	.	.	.	.	.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	D	D	V	R	N	I	C	D	A	K	G	N	S	F	V	D	A	M	K	A	C	G	F	T	L	P	N	A	P	L	T	P	R	Q	D	I	K	A	F	V	E	L	H	I	E	Q	G	C	V	L	E	S	N	G	Q	S	I	G	V	V	N	A	I	V	G	Q	R	R	Y	T	V	T	L	N	G	E	S	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	L	P	P	V	S	F	A	I	V	G	E	P	T	E	X	Q	P	A	I	A	E	K	G	L	X	V	L	D	V	T	A	T	G	K	A	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S				S								S	T	T																			B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																												149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.					.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																		.	.	.	.
Query SS confidence																																		.	.	.	.
Query Sequence		H	A	G	T	T	P	M	G	Y	R	R	D	T	V	Y	A	F	S	R	I	C	H	Q	S	V	E	K	A	K	R	M	G	.	.	.	.	D	P	L	V	L	T	F	G	K	V	E	P	R	P	N	T	V	N	V	V	P	G	K	T	T	F	T	I	D	C	R	H	T	D	A	A	V	L	R	D	F	T	Q	Q
Query Conservation																																		.	.	.	.
Alig confidence			.	.						.																								.	.	.	.												.
Template Conservation			.	.						.																																							.
Template Sequence		H	.	.	A	A	R	D	E	.	G	D	N	A	I	Y	K	V	L	N	D	I	A	W	F	R	D	Y	R	F	E	K	E	S	P	L	L	G	P	V	K	X	S	V	T	V	I	N	.	A	G	T	Q	H	N	V	V	P	D	K	C	T	F	V	V	D	I	R	S	N	E	L	Y	S	N	E	D	L	F	A	E
Template Known Secondary structure		B	.	.	T	T	S	S		.		B		T	T	G	G	G													S			B	T	T	T	B	S										.			S	S	T	T	B															T	T
Template Predicted Secondary structure			.	.						.																																							.
Template SS confidence
		187			.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	N	D	M	R	A	I	C	D	E	M	D	I	G	I	D	I	D	L	W	M	D	E	E	P	V	P	M	N	K	E	L	V	A	T	L	T	E	L	C	E	R	E	K	L	N	Y	R	V	M	H	S	G	A	G	H	D	A	Q	I	F	A	P	R	V	P	T	C	M	I	F	I	P	S	I	N	G	I	S
Query Conservation
Alig confidence																		.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Template Sequence		I	R	K	H	I	A	C	D	A	K	A	R	S	F	R	L	.	.	.	.	.	.	N	S	S	R	I	D	E	K	H	P	F	V	Q	K	A	V	K	X	G	R	I	P	F	.	.	.	.	.	.	.	.	.	G	S	P	T	L	S	D	Q	A	L	X	S	F	A	S	V	K	I	G	P	G	R	S	S	R	S
Template Known Secondary structure				T	T			S					S		S			.	.	.	.	.	.							T	T	S									T	T					.	.	.	.	.	.	.	.	.				S			G	G	G	G			S							S	S		G	G	G	T
Template Predicted Secondary structure																		.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.							.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.										.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	N	P	A	E	R	T	N	I	T	D	L	A	E	G	V	K	T	L	A	L	M	L	Y	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	T	A	E	E	Y	I	X	L	K	E	I	E	E	A	I	G	I	Y	L	D	L	L	D	G	L
Template Known Secondary structure		T	S	T	T																				T	T
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions