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Job DescriptionP77425
Confidence100.00%DateThu Jan 5 12:29:04 GMT 2012
Rank12Aligned Residues351
% Identity14%Templatec2pokB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:peptidase, m20/m25/m40 family; PDBTitle: crystal structure of a m20 family metallo peptidase from streptococcus2 pneumoniae
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30...... ...40.........50.........60 .........70......
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Query Sequence  THFRQAIEETLPWLSSFGADPAGGMTRLLYSPEW. . . LETQQQFKKRMAASGLETRFDEVG. . . NLYGRLNGTEYPQEVV
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Template Sequence  DHVAQHYFEVLRTLISK. . . . . . . . . . KSVFAQQVGLKEVANYLGEIFKRVGAEVEIDESYTAPFVMAHFKSSRPDAKTL
Template Known Secondary structure 
S..........

BTTTTBSTT

SSSS




TT

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   16...20.........30.. .......40.........50.........60.........70.........80.....
 
   77..80....... ..90.........100.........110.........120.........130....
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Query Sequence  LSGSHIDTVVN. . . . . . . . . . . . . . . . . . . . . . GGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYV
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Template Sequence  IFYNHYDTVPADGDQVWTEDPFTLSVRNGFMYGRGVDDDKGHITARLSALRKYMQHHDDLPVNISFIMEGAEESASTDLD
Template Known Secondary structure 






SS


SS
TTS
TTSTTTTTTTTT
SS
SSS
GGGTTTT
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   86...90.........100.........110.........120.........130.........140.........150.........160.....
 
   135....140.........150.........160.........170.........180.........190.........200.........210....
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Query Sequence  FWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQR
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Template Sequence  KYLEKHADKLRGADLLVWEQGT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KNALEQLEISGGNKGIV
Template Known Secondary structure  GGGTTT
S
S

B.........................................B
TTS


BB
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   166...170.........180....... ..190.........200....
 
   215....220.........230.........240.........
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Query Sequence  RYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  TFDAKVKSADVDIHSSYGGVVESAPWYLLQALQSLRAADGRILVEGLYEEVQEPNEREMALLETYGQRNPEEVSRIYGLE
Template Known Secondary structure 
SSS
GGGTTTS

TB
TTS
B

TTTGGG




S
S
TT

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   205....210.........220.........230.........240.........250.........260.........270.........280....
 
   250.........260.........270 .........280.........290.........300.........310........
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Query Sequence  . . . . . . . . VEKAKRMGDPLVLTFGKVEPR. . . PNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGID
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Template Sequence  LPLLQEERMAFLKRFFFDPALNIEGIQSGYQGQGVKTILPAEASAKLEVRLVPGLEPHDVLEKIRKQLDK. NGFDKVELY
Template Known Secondary structure  S

SS
SS
S

SSS



S
TT

.TT
TT
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   285....290.........300.........310.........320.........330.........340.........350.... .....360...
 
   319320.........330.........340..... ....350........ .360.........370....... ..380.........390....
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Query Sequence  IDLWMDEEPVPMNKELVATLTELCERE. KLNYRVMHSGAGH. . DAQIFAPRVPTCMIFIPSI. NGISHNPAERTNITDLA
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Template Conservation                     
  
     
          
           
 
 
  
 
      
   
 
 
    
Template Sequence  YTLGEMSYRSDMSAPAILNVIELAKKFYPQGVSVLPTTAGTGPMHTVFDALEVPMVAFGLGNANSRDHGGDENVRIADYY
Template Known Secondary structure 

B


S

TTT
TT
S

SSB
T


B

SB
TT

TTSTT
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   364.....370.........380.........390.........400.........410.........420.........430.........440...
 
   395....400.....
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Query Sequence  EGVKTLALMLY
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Template Sequence  THIELVEELIR
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   444.....450....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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