Job Description P77425 Confidence 99.31% Date Thu Jan 5 12:29:04 GMT 2012 Rank 66 Aligned Residues 324 % Identity 17% Template c2ijzF_ PDB info PDB header:hydrolase Chain: F: PDB Molecule:probable m18-family aminopeptidase 2; PDBTitle: crystal structure of aminopeptidase Resolution 3.00 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.									.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.
Query Sequence		S	P	E	W	L	E	T	Q	Q	Q	F	K	K	R	M	A	A	S	G	L	E	.	.	.	.	.	.	.	.	T	R	F	D	E	V	G	N	L	Y	G	R	L	N	G	T	E	Y	P	Q	E	V	V	L	S	G	S	H	I	D	T	V	V	N	G	G	N	L	D	G	Q	F	G	A	L	A	A	W	L	A	I
Query Conservation																							.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	P	T	P	F	H	A	T	A	S	L	A	R	R	L	E	A	A	G	Y	R	R	L	D	E	G	G	R	Y	Y	V	T	R	N	D	S	S	L	I	A	I	R	L	G	S	P	L	E	S	G	F	R	L	V	G	A	H	T	D	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T										S												S										T	T	T	T											S	T	T												S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		105	.	.	.	.	110				.	.	.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.											.	.	.
Query SS confidence								.	.	.											.	.	.
Query Sequence		D	W	L	K	T	Q	.	.	.	Y	G	A	P	L	R	T	V	E	V	.	.	.	V	A	M	A	E	E	E	G	S	R	F	P	Y	V	F	W	G	S	K	N	I	F	G	L	A	N	P	D	D	V	R	N	I	C	D	A	K	G	N	S	F	V	D	A	M	K	A	C	G	F	T	L	P	N	A	P	L	T
Query Conservation								.	.	.											.	.	.
Alig confidence		.						.	.	.											.	.	.
Template Conservation		.
Template Sequence		.	C	L	R	V	K	P	N	P	E	I	A	R	N	G	F	L	Q	L	G	V	E	V	Y	G	G	A	L	F	A	P	W	F	D	R	D	L	S	L	A	G	R	V	T	F	R	A	N	G	K	L	E	S	R	L	V	D	F	R	K	A	I	A	V	I	P	N	L	N	P	I	N	A	Q	N	E	L	P	P	I
Template Known Secondary structure		.													T	T										S				S	T	T	S	B	S						S					T	T	T								S				B	B					S	S								S	T	T
Template Predicted Secondary structure		.
Template SS confidence
			87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	Q	D	I	K	A	F	V	E	L	H	I	E	Q	G	C	V	L	E	S	N	G	Q	S	I	G	V	V	N	A	I	V	G	Q	R	R	Y	T	V	T	L	N	G	E	S	N	H	A	G	T	T	P	M	G	Y	R	R	D	T	V	Y	A	F	S	R	I	C	H	Q	S	V	E	K	A	K	R	M	G	D
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Sequence		I	A	Q	L	A	P	G	E	T	A	D	V	V	L	D	Y	E	L	S	F	Y	D	T	Q	S	A	A	V	V	G	L	N	D	E	F	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	R	L	D	N	L	L	S	C	H	.	.	.	.	.	.	.	A	G	L	E	A	L	L	N	A	E	G	D
Template Known Secondary structure							S								S		S			T	T							S						S	S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S		S	S	S	S	T	.	.	.	.	.	.	.	T	T	T	T	T	T	T	T	T	T	S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.														.	.	.	.	.	.	220	.	.	.	.								.	.	.	.	.	230	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.																										.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	L	V	L	T	F	G	K	V	E	P	R	P	N	T	V	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	G	K	T	T	F	T	I	D	C	R	H	T	D	A	A	V	L	R	D	F	T	Q	Q	L	E	N	D	M	R	A	I	C	D	E	M
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.
Template Sequence		E	N	C	I	L	V	C	T	D	H	E	E	V	G	S	C	S	H	C	G	A	D	G	P	F	L	E	Q	V	L	R	R	L	L	P	E	G	D	A	F	S	R	A	I	Q	R	S	L	L	V	S	A	D	N	A	H	G	V	H	P	N	Y	A	D	R	H	D	A	.	.	.	.	.	.	N	H	G	P	A	L
Template Known Secondary structure		S	S	S								S		T	T	T	T						S	S			T	T	T	S			S	S	S	S	S	S	S	S	T	T	T	T	T	S	S														S	S		G	G	G			S	.	.	.	.	.	.	S				S	S
Template Predicted Secondary structure																																																																						.	.	.	.	.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.							.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.					.	.	.	.	.	.	360	.	.	.	.	.				.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.													.	.	.
Query SS confidence																																										.	.	.	.													.	.	.
Query Sequence		D	I	G	I	D	I	D	L	W	M	D	E	E	P	V	P	M	N	K	E	L	V	A	T	L	T	E	L	C	E	R	E	K	L	N	Y	R	V	M	H	.	.	.	.	S	G	A	G	H	D	A	Q	I	F	A	P	.	.	.	R	V	P	T	C	M	I	F	I	P	S	I	N	G	I	S	H	N	P	A	E
Query Conservation																																										.	.	.	.													.	.	.
Alig confidence													.																													.	.	.	.													.	.	.													.	.
Template Conservation													.																																																												.	.
Template Sequence		N	G	G	P	V	I	K	I	N	S	N	.	Q	R	Y	A	T	N	S	E	T	A	G	F	F	R	H	L	C	Q	D	S	E	V	P	V	Q	S	F	V	T	R	S	D	M	G	C	G	S	T	I	G	P	I	T	A	S	Q	V	G	V	R	T	V	D	I	G	L	P	T	F	.	.	A	M	H	S	I	R	E
Template Known Secondary structure		S				B					S	S	.	S			S							G	G	G	T						T						B					S	S								S	T	T	T	G	G	G	S	S												.	.	S		S	S	S	S
Template Predicted Secondary structure													.																																																												.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.			.	400	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	N	I	T	D	L	A	E	G	V	K	T	L	A	L	M	L	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	G	S	H	D	L	A	H	L	V	K	V	L	G	A	F	Y	A
Template Known Secondary structure					S	S							T	T					T	S
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions