Job Description P77425 Confidence 100.00% Date Thu Jan 5 12:29:04 GMT 2012 Rank 33 Aligned Residues 310 % Identity 17% Template c2cf4A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:protein ph0519; PDBTitle: pyrococcus horikoshii tet1 peptidase can assemble into a2 tetrahedron or a large octahedral shell Resolution 3.08 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		L	P	W	L	S	S	F	G	A	D	P	A	G	G	M	T	R	L	L	Y	S	P	E	W	L	E	T	Q	Q	Q	F	K	K	R	M	A	A	S	G	L	E	T	R	F	D	E	V	G	N	L	Y	G	R	L	N	G	T	E	Y	P	Q	E	V	V	L	S	G	S	H	I	D	T	V	V	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.																					.																	.	.	.																.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.																					.																	.	.	.
Template Sequence		I	E	K	L	K	K	F	T	Q	I	P	G	.	.	.	.	.	.	.	I	S	G	Y	E	E	R	I	R	E	E	I	I	R	E	I	K	D	F	A	.	D	Y	K	V	D	A	I	G	N	L	I	V	E	L	G	E	.	.	.	G	E	E	R	I	L	F	X	A	H	X	D	E	I	G	L	L	I	T	G	I
Template Known Secondary structure											S			.	.	.	.	.	.	.		T	T												T	T	T	T	S	S	.						S	S	S							S		.	.	.	S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.																					.																	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.								.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.				.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
											87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	N	G	G	N	L	D	G	Q	F	G	A	L	A	A	W	L	A	I	D	W	L	K	T	Q	Y	G	A	P	L	R	T	V	E	V	V	A	M	A	E	E	E	G	S	R	F	P	Y	V	F	W	G	S	K	N	I	F	G	L	A	N	P	D	D	V	R	N	I	C	D	A	K
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.																																													.
Template Conservation																															.	.	.	.	.	.																																													.
Template Sequence		T	D	E	G	K	L	R	F	R	K	V	G	G	I	D	D	R	L	L	Y	G	R	H	V	N	V	V	T	E	.	.	.	.	.	.	K	G	I	L	D	G	V	I	G	A	T	P	P	H	L	S	L	E	R	D	K	S	V	I	P	W	Y	D	L	V	I	D	I	G	A	E	S	K	E	E	A	L	E	L	.
Template Known Secondary structure			T	T	S								S				G	G	G	T	T	T								S	.	.	.	.	.	.	S													S	S		S	S				S				T	T	S			B	B				S	S						T	T	.
Template Predicted Secondary structure																															.	.	.	.	.	.																																													.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.							.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	S	F	V	D	A	M	K	A	C	G	F	T	L	P	N	A	P	L	T	P	R	Q	D	I	K	A	F	V	E	L	H	I	E	Q	G	C	V	L	E	S	N	G	Q	S	I	G	V	V	N	A	I	V	G	Q	R	R	Y	T	V	T	L	N	G	E	S	N	H	A	G	T	T	P	M	G	Y	R	R	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	P	L	D	F	A	V	F	K	K	H	F	S	V	L	N	G	K	Y	V	.	.	S	T	R	G	L	D	D	R	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T													S	S	S			.	.			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template SS confidence
																																																		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.				.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																														.	.	.
Query SS confidence																														.	.	.
Query Sequence		T	V	Y	A	F	S	R	I	C	H	Q	S	V	E	K	A	K	R	M	G	D	P	L	V	L	T	F	G	.	.	.	K	V	E	P	R	P	N	T	V	N	V	V	P	G	K	T	T	F	T	I	D	C	R	H	T	D	A	A	V	L	R	D	F	T	Q	Q	L	E	N	D	M	R	A	I	C	D	E	M	D
Query Conservation																														.	.	.
Alig confidence																														.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	V	V	A	L	I	E	A	I	K	D	L	V	D	H	E	L	E	G	K	V	I	F	A	F	T	V	Q	E	E	V	G	L	K	G	A	K	F	L	A	N	H	Y	Y	P	Q	Y	A	F	A	I	D	S	F	A	C	C	S	P	L	T	G	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	G
Template Known Secondary structure												S	S	G	G	G			S	S								S	S		T	T	T	S							T	T	T				S	S										S	S	S	S	S	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.														240	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	I	D	I	D	L	W	M	D	E	E	P	V	P	M	N	K	E	L	V	A	T	L	T	E	L	C	E	R	E	K	L	N	Y	R	V	M	H	S	G	A	G	H	D	A	Q	I	F	A	P	R	V	P	T	C	M	I	F	I	P	S	I	N	G	I	S	H	N	P	A	E	R	T	N	I	T	D	L	A
Query Conservation
Alig confidence																.	.																																																.	.
Template Conservation																.	.																																																.	.
Template Sequence		K	G	P	V	I	R	A	V	D	N	S	A	I	Y	.	.	S	R	D	L	A	R	K	V	W	S	I	A	E	K	N	G	I	E	I	Q	I	G	V	T	G	G	G	T	D	A	S	A	F	Q	D	R	S	K	T	L	A	L	S	V	P	I	K	.	.	Y	L	H	S	E	V	E	T	L	H	L	N	D	L	E
Template Known Secondary structure		S									S	S		B		.	.														T	T	T									S	S			G	G	G	G	T	T	T	S	S											.	.	S	T	T	T	T	T
Template Predicted Secondary structure																.	.																																																.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	V	K	T	L	A	L	M	L	Y	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	V	K	L	I	E	A	L	A	F	E	L
Template Known Secondary structure					T	T	S	S	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions