Job Description P77425 Confidence 100.00% Date Thu Jan 5 12:29:04 GMT 2012 Rank 19 Aligned Residues 332 % Identity 14% Template c1ysjB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:protein yxep; PDBTitle: crystal structure of bacillus subtilis yxep protein (apc1829), a2 dinuclear metal binding peptidase from m20 family Resolution 2.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		T	H	F	R	Q	A	I	E	E	T	L	P	W	L	S	S	F	G	A	D	P	A	G	G	M	T	R	L	L	Y	S	P	E	W	L	E	T	Q	Q	Q	F	K	K	R	M	A	A	S	G	L	E	T	R	F	D	E	V	G	.	.	N	L	Y	G	R	L	N	G	T	E	Y	P	Q	E	V	V	L	S	G	S
Query Conservation																																																												.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.																																.	.													.
Template Conservation																			.	.	.	.	.	.	.	.	.	.																																														.
Template Sequence		K	A	F	H	T	R	L	I	N	X	R	R	D	L	H	E	H	.	.	.	.	.	.	.	.	.	.	P	E	L	S	F	Q	E	V	E	T	T	K	K	I	R	R	W	L	E	E	E	Q	I	E	I	L	D	V	P	Q	L	K	T	G	V	I	A	E	I	K	G	R	E	D	G	.	P	V	I	A	I	R	A
Template Known Secondary structure																		S	.	.	.	.	.	.	.	.	.	.				T	T															T	T	T							T	T		S	S									S				.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.																																														.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20											.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.
		81	.	.	.	.	.	.																.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	I	D	T	V	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	N	L	D	G	Q	F	G	A	L	A	A	W	L	A	I	D	W	L	K	T	Q	Y	G	A	P	L	R	T	V	E	V	V	A	M	A	E	E	E	G	S	R	F	P	Y	V	F	W	G	S	K	N	I	F	G	L	A
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	I	D	A	L	P	I	Q	E	Q	T	N	L	P	F	A	S	K	V	D	G	T	X	H	A	C	G	H	D	F	H	T	A	S	I	I	G	T	A	X	L	L	N	Q	R	R	A	E	L	K	G	T	V	R	F	I	F	Q	P	A	E	E	I	A	A	G	A	R	K	V	L	E	A	G	V	L	N	G	V	S
Template Known Secondary structure						B	S					S			T	T			S	S	T	T		B		T	T																	T	T		T	T	T											S		T	T	T	T									T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	D	D	V	R	N	I	C	D	A	K	G	N	S	F	V	D	A	M	K	A	C	G	F	T	L	P	N	A	P	L	T	P	R	Q	D	I	K	A	F	V	E	L	H	I	E	Q	G	C	V	L	E	S	N	G	Q	S	I	G	V	V	N	A	I	V	G	Q	R	R	Y	T	V	T	L	N	G	E	S	N
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	X	H	N	K	P	D	L	P	V	G	T	I	G	.	V	K	E	G	P	L	X	A	S	V	D	R
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S		T	T				.			S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		153	.																																																			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	G	T	T	P	M	G	Y	R	R	D	T	V	Y	A	F	S	R	I	C	H	Q	S	V	E	K	A	K	R	M	G	D	P	L	V	L	T	F	G	K	V	E	P	R	P	N	T	V	N	V	V	P	G	K	T	T	F	T	I	D	C	R	H	T	D	A	A	V	L	R	D	F	T	Q	Q	L	E	N	D
Query Conservation
Alig confidence			.	.																						.	.	.	.	.	.	.	.												.
Template Conservation			.	.																						.	.	.	.	.	.	.	.												.
Template Sequence		F	.	.	E	I	V	I	K	G	K	I	D	P	I	A	A	A	G	Q	I	I	S	G	L	.	.	.	.	.	.	.	.	Q	N	A	V	V	S	I	T	R	V	Q	.	A	G	T	S	W	N	V	I	P	D	Q	A	E	X	E	G	T	V	R	T	F	Q	K	E	A	R	Q	A	V	P	E	H	X	R	R	V
Template Known Secondary structure			.	.																				T	T	.	.	.	.	.	.	.	.												.			S	S	S	S	S			S											S	S
Template Predicted Secondary structure			.	.																						.	.	.	.	.	.	.	.												.
Template SS confidence
		182			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.									.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																																														.																									.
Query SS confidence																																														.																									.
Query Sequence		M	R	A	I	C	D	E	M	D	I	G	I	D	I	D	L	W	M	D	E	E	P	V	P	M	N	K	E	L	V	A	T	L	T	E	L	C	E	R	E	K	L	N	Y	.	R	V	M	H	S	G	A	G	H	D	A	Q	I	F	A	P	R	V	P	T	C	M	I	F	.	I	P	S	I	N	G	I	S	H	N
Query Conservation																																														.																									.
Alig confidence																																														.																									.
Template Conservation
Template Sequence		A	E	G	I	A	A	G	Y	G	A	Q	A	E	F	K	W	F	P	Y	L	P	S	V	Q	N	D	G	T	F	L	N	A	A	S	E	A	A	A	R	L	G	Y	Q	T	V	H	A	E	Q	S	P	G	G	E	D	F	A	L	Y	Q	E	K	I	P	G	F	F	V	W	X	G	T	N	G	T	E	E	W	H	H
Template Known Secondary structure									T	T																		G	G	G										T	T	T									B	S	S			T						T	T	S												S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	E	R	T	N	I	T	D	L	A	E	G	V	K	T	L	A	L	M	L	Y	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	A	F	T	L	D	E	E	A	L	T	V	A	S	Q	Y	F	A	E	L	A	V	I	V
Template Known Secondary structure		T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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