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Job DescriptionP77425
Confidence100.00%DateThu Jan 5 12:29:04 GMT 2012
Rank11Aligned Residues349
% Identity17%Templatec1vixA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:peptidase t; PDBTitle: crystal structure of a putative peptidase t
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50... ......60......... 70.........80...
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Query Sequence  RQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLE. TRFDEVGNLYGRLNGT. EYPQEVVLSGSHID
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Template Sequence  LDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEEMGLINVTLSEKGTLMATLPANVPGDIPAIGFISHVD
Template Known Secondary structure  S

B

SS
SSSSSSTTTT

TTS


SS
S





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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   84.....90. ........100.........110..
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Query Sequence  TVVNGGNL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DGQFGALAAWLAIDWLKTQYG
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Template Sequence  TSPDCSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKKI
Template Known Secondary structure  B
TTS

SS



S

SS
TTTT
TTT
GGGGG
TTS


SSS


TT
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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   113......120.........130.........140.........150.........160.........170.........180.........190..
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Query Sequence  APLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIE
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Template Sequence  P. HGDIRVAFTPDEEVGKGAKHFDVDAFDARWA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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S
GGGT
TTTT



S...............................................
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   161 ........170.........180.........190..
 
   193......200.........210.........220.........230.........240.........250.........260.........270..
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Query Sequence  QGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPRPN
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Template Sequence  . . . YTVDGGGVGELEFENFNAASVNIKIVGNNVHPGTAKGVM. VNALSLAARIHAEVPADESPEMTEGYEGFY. . . . HLA
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STT

B

B


GGG
TTT
.B
S
TTSSTTT

TT

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   193......200.........210.........220.........230. ........240.........250.........260. ...
 
   273......280.........290.........300.........310.... .....320.........330.........340......
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Query Sequence  TVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMD. . . . . . IGIDIDLWMDEEPVPMNKELVATLTELCEREK
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Template Conservation      

  
    
 
             
                                     
   
       
Template Sequence  SMKGTVERADMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILDIAQQAMRDCD
Template Known Secondary structure 
SSSSTT

TT


STSTTT
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   265....270.........280.........290.........300.........310.........320.........330.........340....
 
   347..350.........360.........370.........380.........390.........400.........410.
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Query Sequence  LNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
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Template Sequence  IEPELKPIRGGTDGAQLSFMGLPCPNLFTG. GYNYHGKHEFVTLEGMEKAVQVIVRIAELTAQRK
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BSS

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S.S
SSTT


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   345....350.........360.........370.... .....380.........390.........400........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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