Job Description P77425 Confidence 100.00% Date Thu Jan 5 12:29:04 GMT 2012 Rank 30 Aligned Residues 333 % Identity 17% Template c1vheA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:aminopeptidase/glucanase homolog; PDBTitle: crystal structure of a aminopeptidase/glucanase homolog Resolution 1.90 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		A	I	E	E	T	L	P	W	L	S	S	F	G	A	D	P	A	G	G	M	T	R	L	L	Y	S	P	E	W	L	E	T	Q	Q	Q	F	K	K	R	M	A	A	S	G	L	E	T	R	F	D	E	V	G	N	L	Y	G	R	L	N	G	T	E	Y	P	Q	E	V	V	L	S	G	S	H	I	D	T	V	V	.
Query Conservation																																																																																	.
Alig confidence																			.	.	.	.	.	.	.																																										.														.
Template Conservation																			.	.	.	.	.	.	.																																										.
Template Sequence		K	L	D	E	T	L	T	X	L	K	D	L	T	D	A	K	G	.	.	.	.	.	.	.	I	P	G	N	E	R	E	V	R	Q	V	X	K	S	Y	I	E	P	F	A	D	E	V	T	T	D	R	L	G	S	L	I	A	K	K	T	G	A	E	N	G	.	P	K	I	X	I	A	G	H	L	D	E	V	G	F
Template Known Secondary structure																S			.	.	.	.	.	.	.		T	T														G	G	G		S						T	T									S	S	T	T	S	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.																																										.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.								20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.
																87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	G	N	L	D	G	Q	F	G	A	L	A	A	W	L	A	I	D	W	L	K	T	Q	Y	G	A	P	L	R	T	V	E	V	V	A	M	A	E	E	E	G	S	R	F	P	Y	V	F	W	G	S	K	N	I	F	G	L	A	N	P	D	D	V	R	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	V	T	Q	I	T	D	K	G	F	I	R	F	Q	T	V	G	G	W	W	A	Q	V	X	L	A	Q	R	V	T	I	V	T	K	K	G	E	I	T	G	V	I	G	S	K	P	P	H	I	L	S	P	E	A	R	K	K	S	V	E	I	K	D	X	F	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T	S								S				G	G	G	T	T	T								T	T												G	G	G	S		T	T	T	T	T	S				G	G	G				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	C	D	A	K	G	N	S	F	V	D	A	M	K	A	C	G	F	T	L	P	N	A	P	L	T	P	R	Q	D	I	K	A	F	V	E	L	H	I	E	Q	G	C	V	L	E	S	N	G	Q	S	I	G	V	V	N	A	I	V	G	Q	R	R	Y	T	V	T	L	N	G	E	S	N	H	A	G	T	T	P	M
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	G	A	S	S	R	E	E	A	L	E	W	G	V	L	P	G	D	X	I	V	P	H	F	E	F	T	V	X	N	N	E	K	F	L	L	A	K	A	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S		S	S							T	T			T	T													S	S	T	T					T	T	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template SS confidence
																																									141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	R	R	D	T	V	Y	A	F	S	R	I	C	H	Q	S	V	E	K	A	K	R	M	G	D	P	L	V	L	T	F	G	K	V	E	P	R	P	N	T	V	N	V	V	P	G	K	T	T	F	T	I	D	C	R	H	T	D	A	A	V	L	R	D	F	T	Q	Q	L	E	N	D	M	R	A	I	C	D	E
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	W	D	N	R	I	G	C	A	I	A	I	D	V	L	R	N	L	Q	N	T	D	H	P	N	I	V	Y	G	V	G	T	V	Q	E	E	V	G	L	R	G	A	K	T	A	A	H	T	I	Q	P	D	I	A	F	G	V	D	V	G	I	A	G	D	T	P	G	I	S	E	K	E	A	Q	S	K	X	G
Template Known Secondary structure		.	.	.																			T	S			S	S								S			T	T	T	S													S													S	T	T			T	T	T					T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.	.	.	.				.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.															.	.	.
Query SS confidence																																										.															.	.	.
Query Sequence		M	D	I	G	I	D	I	D	L	W	M	D	E	E	P	V	P	M	N	K	E	L	V	A	T	L	T	E	L	C	E	R	E	K	L	N	Y	R	V	M	.	H	S	G	A	G	H	D	A	Q	I	F	A	P	R	.	.	.	V	P	T	C	M	I	F	I	P	S	I	N	G	I	S	H	N	P	A	E	R	T
Query Conservation																																										.															.	.	.
Alig confidence											.	.	.	.																												.															.	.	.												.	.
Template Conservation											.	.	.	.																																																									.	.
Template Sequence		K	G	P	Q	I	I	V	Y	D	.	.	.	.	A	S	X	V	S	H	K	G	L	R	D	A	V	V	A	T	A	E	E	A	G	I	P	Y	Q	F	D	A	I	A	G	G	G	T	D	S	G	A	I	H	L	T	A	N	G	V	P	A	L	S	I	T	I	A	T	R	.	.	Y	I	H	T	H	A	A	X	L
Template Known Secondary structure		S									.	.	.	.	T	T																			T									T	T				T					T	T	S	T	T												B	.	.	S	T	T	S	S
Template Predicted Secondary structure											.	.	.	.																																																									.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.					.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.			.	.	.	.	.	.	.	330	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	T	D	L	A	E	G	V	K	T	L	A	L	M	L	Y	Q	L	A	W	Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	R	D	D	Y	E	N	A	V	K	L	I	T	E	V	I	K	K	L	D	R	K	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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