Return to main results Retrieve Phyre Job Id

Job DescriptionP77510
Confidence99.68%DateThu Jan 5 12:30:10 GMT 2012
Rank25Aligned Residues106
% Identity19%Templatec1mx0D_
PDB info PDB header:isomeraseChain: D: PDB Molecule:type ii dna topoisomerase vi subunit b; PDBTitle: structure of topoisomerase subunit
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   433......440.........450.... .....460.... .....470.........480.........490.........500 ......
Predicted Secondary structure 



.
.
















....



Query SS confidence 





















.









.



































. . . .





Query Sequence  FAAIVGNLLDNAFEASLRSDEG. NKIVELFLSD. EGDDVVIEVADQGCGVPESLRDKIFEQGVSTRADEP. . . . GEHGIG
Query Conservation 
 


 


 



        .   
 
    .    
 
 
 
 
 

  
 
  


 
  
     .... 




Alig confidence 





















.









.



































....





Template Conservation 
   
 


 




         
 
 
           
 
 


 

  
 
   
     


       
  


Template Sequence  LYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGXYGLG
Template Known Secondary structure  TTGGGT


TTTT
S



GGGSSS

S

SSS

S

SS
Template Predicted Secondary structure 
































Template SS confidence 















































































   32.......40.........50.........60.........70.........80.........90.........100.........110.
 
   507..510.........520 .........530........
Predicted Secondary structure 


.




Query SS confidence 













.

















Query Sequence  LYLIASYVTRCGGV. ITLEDNDPCGTLFSIYIP
Query Conservation 
 

  

    
 .
 
 
  
 

 
 
 

Alig confidence 













.

















Template Conservation 
      
    
  
 
 
             
Template Sequence  VKAAVLYSQXHQDKPIEIETSPVNSKRIYTFKL
Template Known Secondary structure 




TT
S
Template Predicted Secondary structure 







Template SS confidence 
































   112.......120.........130.........140....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions