 |
Job Description | P77510 | Confidence | 99.68% | Date | Thu Jan 5 12:30:10 GMT 2012 |
Rank | 25 | Aligned Residues | 106 |
% Identity | 19% | Template | c1mx0D_ |
PDB info |
PDB header:isomerase | Chain: D: PDB Molecule:type ii dna topoisomerase vi subunit b; |
PDBTitle: structure of topoisomerase subunit
|
Resolution | 2.30 Å |
|
 |
  |   |
433 | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | |
. | . | . | . | . | 460 | . | . | . | . | |
. | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | |
|
|
|
. | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . |
|  |  |  |  |  |  |  |  |  | . |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
| . | . | . | . |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
Query Sequence |   |
F | A | A | I | V | G | N | L | L | D | N | A | F | E | A | S | L | R | S | D | E | G | . |
N | K | I | V | E | L | F | L | S | D | . |
E | G | D | D | V | V | I | E | V | A | D | Q | G | C | G | V | P | E | S | L | R | D | K | I | F | E | Q | G | V | S | T | R | A | D | E | P | . |
. |
. |
. |
G | E | H | G | I | G |
Query Conservation |   |
|   |
|
|
|   |
|
|
|   |
|
|
|
|   |   |   |   |   |   |   |   | . |   |   |   |
|   |
|   |   |   |   | . |   |   |   |   |
|   |
|   |
|   |
|   |
|   |
|
|   |   |
|   |
|   |   |
|
|
|   |
|   |   |
|   |   |   |   |   | . | . | . | . |   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|   |
|
|
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|
|   |
|
|   |   |
|   |
|   |   |   |
|   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |
|   |   |
|
|
|
Template Sequence |   |
L | Y | Q | T | V | R | E | L | I | E | N | S | L | D | A | T | D | V | H | G | I | L | P | N | I | K | I | T | I | D | L | I | D | D | A | R | Q | I | Y | K | V | N | V | V | D | N | G | I | G | I | P | P | Q | E | V | P | N | A | F | G | R | V | L | Y | S | S | K | Y | V | N | R | Q | T | R | G | X | Y | G | L | G |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | G | G | G | T |
|
|
|  |  |  |  |  |  |  |  |  |  | T | T | T | T |  |  |  |  |  |  |  |  |
| S |
|
|
|
| G | G | G |  |  |  |  |  |  | S | S | S |
|
| S |
|
| S | S | S |
|
| S |
|
| S | S |
|  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
32 | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . |
  |
  |   |
507 | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | |
. | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|  | . |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | Y | L | I | A | S | Y | V | T | R | C | G | G | V | . |
I | T | L | E | D | N | D | P | C | G | T | L | F | S | I | Y | I | P |
Query Conservation |   |
|   |
|
|   |   |
|
|   |   |   |   |
|   | . |
|   |
|   |
|   |   |
|   |
|
|   |
|   |
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
V | K | A | A | V | L | Y | S | Q | X | H | Q | D | K | P | I | E | I | E | T | S | P | V | N | S | K | R | I | Y | T | F | K | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
| T | T |
| S |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
112 | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|