Job Description P71244 Confidence 97.07% Date Thu Jan 5 12:12:40 GMT 2012 Rank 4 Aligned Residues 287 % Identity 16% Template d1rmga_ SCOP info Single-stranded right-handed beta-helix Pectin lyase-like Galacturonase Resolution 2.00

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.						.	.	.	.	.	.	.	50	.	.	.	.	.				.	.	.	.	60	.	.	.	.			.	.	.	.	.	70					.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																			.	.	.	.	.														.	.	.										.	.							.	.	.	.
Query SS confidence																			.	.	.	.	.														.	.	.										.	.							.	.	.	.
Query Sequence		A	R	A	L	P	A	R	Q	S	V	N	I	N	D	Y	N	P	.	.	.	.	.	H	D	W	I	A	S	F	K	Q	A	F	S	E	.	.	.	G	Q	T	V	V	V	P	A	G	.	.	L	V	C	D	N	I	.	.	.	.	N	T	G	I	F	I	P	P	G	K	T	L	H	I	L	G	S	L	R	G	N
Query Conservation																			.	.	.	.	.														.	.	.										.	.							.	.	.	.
Alig confidence																			.	.	.	.	.														.	.	.										.	.							.	.	.	.
Template Conservation
Template Sequence		A	S	T	K	G	A	T	K	T	C	N	I	L	S	Y	G	A	V	A	D	N	S	T	D	V	G	P	A	I	T	S	A	W	A	A	C	K	S	G	G	L	V	Y	I	P	S	G	N	Y	A	L	N	T	W	V	T	L	T	G	G	S	A	T	A	I	Q	L	D	G	I	I	Y	R	T	G	T	A	S	G	N
Template Known Secondary structure													G	G	G	G	T				S	S	S	S	B													T	B	T							S	S						S						S										S									S	S
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.															.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	R	G	R	F	V	L	Q	D	G	S	Q	V	T	G	E	D	G	G	S	M	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	T	L	D	V	R	G	S	D	C	T	I	K	G	L	T	M	S	G	F	G	P	V	T	Q	I	Y	I	G	G	K	N	K	R	V	M	R	N	L	I	I	D	N
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.
Template Sequence		M	I	A	V	T	D	T	T	D	F	E	L	F	S	S	T	S	K	G	A	V	Q	G	F	G	Y	V	Y	H	A	E	G	T	Y	G	A	R	I	L	R	L	T	D	V	T	H	F	S	V	H	D	I	I	L	V	D	A	P	A	F	H	F	T	M	D	T	C	.	.	.	.	.	.	S	D	G	E	V	Y	N
Template Known Secondary structure																S	S	S								T					T	T	T																										S	S		S							.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.							.	160	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	V	S	H	A	N	Y	A	I	L	R	Q	G	F	H	N	Q	I	I	G	A	N	I	T	N	C	K	F	S	D	L	Q	G	D	A	I	E	W	N	V	A	I	N	D	R	D	I	L	I	S	D	H	V	I	E	R	I	N	C	T	N	G	K	I	N	W	G	I	G	I	G	L	A	G	S	T	Y	D	N
Query Conservation
Alig confidence					.																												.											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.																												.											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	A	I	.	R	G	G	N	E	G	G	L	D	G	I	D	V	W	G	S	N	I	W	V	H	D	V	E	V	T	N	.	K	D	E	C	V	T	V	K	S	P	.	.	.	.	.	.	.	.	.	.	.	.	A	N	N	I	L	V	E	S	I	Y	C	N	W	S	G	G	C	A	M	G	S	L	G	A	D	T
Template Known Secondary structure					.				S	S	T	T			S																	S	.	S	S									.	.	.	.	.	.	.	.	.	.	.	.													S	S	S									T	T
Template Predicted Secondary structure					.																												.											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		166	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.													.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.												280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																													.																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	Y	P	E	D	Q	A	V	K	N	F	V	V	A	N	I	T	G	S	D	C	R	Q	L	I	H	V	.	E	N	G	K	H	F	V	I	R	N	I	K	A	R	N	.	.	.	.	.	.	.	.	.	.	.	I	T	P	D	F	S	K	K	A	G	I	D	N	A	T	V	A	I	Y	G	C	D	N	F	V	I
Query Conservation																													.																.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.																					.																.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.																																																																	.	.	.	.	.	.	.	.
Template Sequence		D	.	.	.	.	.	.	V	T	D	I	V	Y	R	N	V	Y	T	W	S	S	N	Q	M	Y	M	I	K	S	N	G	G	S	G	T	V	S	N	V	L	L	E	N	F	I	G	H	G	N	A	Y	S	L	D	I	D	G	Y	W	S	S	M	T	A	V	A	G	D	G	V	Q	.	.	.	.	.	.	.	.	L
Template Known Secondary structure			.	.	.	.	.	.													S	S	S		S						B	B																			S		S					T	B		T	T	S			B	S	S	S				.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.																																																																	.	.	.	.	.	.	.	.
Template SS confidence
		232							.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.									.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	I	E	M	I	N	S	A	G	M	L	I	G	Y	G	V	I	K	G	K	Y	L	S	I	P	Q	N	F	R	V	N	D	I	Q	L	D	N	T	H	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	N	I	T	V	K	N	W	K	G	T	E	A	N	G	A	T	R	P	P	I	R	V	V	C	S	D	T	A	P	C	T	D	L	T	L	E	D	I	A	I
Template Known Secondary structure														S		T	T	T	S		S						B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions