Job Description P71244 Confidence 96.29% Date Thu Jan 5 12:12:40 GMT 2012 Rank 6 Aligned Residues 256 % Identity 17% Template d1k5ca_ SCOP info Single-stranded right-handed beta-helix Pectin lyase-like Galacturonase Resolution 0.96

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																																		.	.	.																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		G	Q	T	V	V	V	P	A	G	L	V	C	D	N	I	N	T	G	I	F	I	P	P	G	K	T	L	H	I	L	G	S	.	.	.	L	R	G	N	G	R	G	R	F	V	L	Q	D	G	S	Q	V	T	G	E	D	G	G	S	M	H	N	I	T	L	D	V	R	G	S	.	.	.	.	.	.	.	.	.	.
Query Conservation																																		.	.	.																																				.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.															.	.	.																								.	.	.	.									.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.																																									.	.	.	.
Template Sequence		L	N	G	F	T	V	P	A	G	N	T	L	V	.	.	.	.	.	L	N	P	D	K	G	A	T	V	T	M	A	G	D	I	T	F	A	K	T	T	L	D	G	P	L	F	T	I	D	G	T	G	I	N	F	V	G	A	D	.	.	.	.	H	I	F	D	G	N	G	A	L	Y	W	D	G	K	G	T	N	N
Template Known Secondary structure									T	T					.	.	.	.	.					T	T							S									S		S		S													T	T	.	.	.	.							G	G	G	T			S		T	T	T	S
Template Predicted Secondary structure															.	.	.	.	.																																									.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.						.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
															123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	D	C	T	I	K	G	L	T	M	S	G	F	G	P	V	T	Q	I	Y	I	G	G	K	N	K	R	V	M	R	N	L	I	I	D	N	L	T	V	S	H	A	N	Y	A	I	L	R	Q	G	F	H	N	Q	I	I	G	A	N	I	T	N	C	K	F	S	D	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																																																	.
Template Conservation																																																																															.
Template Sequence		G	T	H	K	P	H	P	F	L	K	I	K	G	S	G	T	Y	K	K	F	E	V	L	N	S	P	A	Q	A	I	S	V	G	P	T	D	A	H	L	T	L	D	G	I	T	V	D	D	F	A	G	D	T	K	N	L	G	H	N	T	D	G	F	D	V	S	A	N	N	V	T	I	Q	N	C	I	V	.	K	N
Template Known Secondary structure		S	S						S											S					S		S	S																S						G	G	G	G	G	G	G				S			S						S	S					S				.		S
Template Predicted Secondary structure																																																																															.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.				.
Predicted Secondary structure																																																																														.	.	.
Query SS confidence																																																																														.	.	.
Query Sequence		Q	G	D	A	I	E	W	N	V	A	I	N	D	R	D	I	L	I	S	D	H	V	I	E	R	I	N	C	T	N	G	K	I	N	W	G	I	G	I	G	L	A	G	S	T	Y	D	N	N	Y	P	E	D	Q	A	V	K	N	F	V	V	A	N	I	T	G	S	D	C	R	Q	L	I	H	V	E	.	.	.	N
Query Conservation																																																																														.	.	.
Alig confidence												.	.	.	.	.	.	.	.															.	.	.													.	.	.	.	.	.	.	.																						.	.	.
Template Conservation												.	.	.	.	.	.	.	.															.	.	.													.	.	.	.	.	.	.	.
Template Sequence		Q	D	D	C	I	A	I	N	D	G	.	.	.	.	.	.	.	.	N	N	I	R	F	E	N	N	Q	C	S	G	G	H	.	.	.	G	I	S	I	G	S	I	A	T	G	K	H	.	.	.	.	.	.	.	.	V	S	N	V	V	I	K	G	N	T	V	T	R	S	M	Y	G	V	R	I	K	A	Q	R	T
Template Known Secondary structure		S	S		S							.	.	.	.	.	.	.	.							S					S	S		.	.	.									T	T			.	.	.	.	.	.	.	.								S																T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.															.	.	.													.	.	.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.									.	.	.	.	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.	.	.									.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300										.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.				.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.																																	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.																																	.	.	.
Query Sequence		G	K	H	F	V	I	R	N	I	K	A	R	N	I	T	P	D	F	S	K	K	A	G	I	D	N	A	T	V	A	I	Y	G	C	.	.	.	.	.	.	.	.	.	D	N	F	V	I	D	N	I	E	M	I	N	S	A	G	M	L	I	G	Y	G	V	I	K	G	K	Y	L	S	I	P	Q	.	.	.	N	F
Query Conservation																																				.	.	.	.	.	.	.	.	.																																	.	.	.
Alig confidence																			.	.	.	.	.													.	.	.	.	.	.	.	.	.																																	.	.	.
Template Conservation																			.	.	.	.	.
Template Sequence		A	T	S	A	S	V	S	G	V	T	Y	D	A	N	T	I	S	.	.	.	.	.	G	I	A	K	Y	G	V	L	I	S	Q	S	Y	P	D	D	V	G	N	P	G	T	G	A	P	F	S	D	V	N	F	T	G	G	A	T	T	I	K	V	N	N	A	A	T	R	V	T	V	E	C	G	N	C	S	G	N	W
Template Known Secondary structure				S										S					.	.	.	.	.														T	S	S	S	S	S			S	S	S									S	S								T	T									S	S			S
Template Predicted Secondary structure																			.	.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.						250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	N	D	I	Q	L	D	N	T	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	W	S	Q	L	T	V	T	G	G	K
Template Known Secondary structure										S	S	B
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions