Job Description P71244 Confidence 96.52% Date Thu Jan 5 12:12:40 GMT 2012 Rank 5 Aligned Residues 287 % Identity 19% Template c3gqnA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:preneck appendage protein; PDBTitle: crystal structure of the pre-mature bacteriophage phi29 gene product2 12 Resolution 2.15 Å

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		35	.	.	.	.	40	.	.						.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.								.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure										.	.	.	.	.																																														.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.																																														.	.	.	.	.	.	.
Query Sequence		V	N	I	N	D	Y	N	P	.	.	.	.	.	H	D	W	I	A	S	F	K	Q	A	F	S	E	G	Q	T	V	V	V	P	A	G	L	V	C	D	N	I	N	T	G	I	F	I	P	P	G	K	T	L	H	I	L	G	S	.	.	.	.	.	.	.	L	R	G	N	G	R	G	R	F	V	L	Q	D	G	S
Query Conservation										.	.	.	.	.																																														.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.																										.	.																			.	.	.	.	.	.	.
Template Conservation																																								.	.
Template Sequence		V	S	V	K	T	Y	G	A	K	G	D	G	V	T	D	D	I	R	A	F	E	K	A	I	E	S	G	F	P	V	Y	V	P	Y	G	T	F	M	.	.	V	S	R	G	I	K	L	P	S	N	T	V	L	T	G	A	G	K	R	N	A	V	I	R	F	M	D	S	V	G	R	G	E	S	L	M	Y	N	E	N
Template Known Secondary structure				S	G	G	G	T																			T	T	S						S					.	.		S	S						S	S																	T	T			S	S			S				S
Template Predicted Secondary structure																																								.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.							.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.																.	.
Query SS confidence																																																								.	.	.	.	.	.																.	.
Query Sequence		Q	V	T	G	E	D	G	G	S	M	H	N	I	T	L	D	V	R	G	S	D	C	T	I	K	G	L	T	M	S	G	F	G	P	V	T	Q	I	Y	I	G	G	K	N	K	R	V	M	R	N	L	I	I	D	.	.	.	.	.	.	N	L	T	V	S	H	A	N	Y	A	I	L	R	Q	G	.	.	F	H	N
Query Conservation																																																								.	.	.	.	.	.																.	.
Alig confidence																																																								.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		V	T	T	G	N	E	N	I	F	L	S	S	F	T	L	D	G	N	N	K	R	L	G	Q	G	I	S	G	I	G	G	S	R	E	S	N	L	S	I	R	A	C	H	N	V	Y	I	R	D	I	E	A	V	D	C	T	L	H	G	I	D	I	T	C	G	G	L	D	Y	P	Y	L	G	D	G	T	T	A	P	N
Template Known Secondary structure		T	T	T																G	G	G	G		S	S				S	S	T	T	T	T		S					S													S		S	S		S						S	S	S	S						T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	I	G	A	N	I	T	N	C	K	F	S	D	L	Q	G	D	A	I	E	W	N	V	A	I	N	D	R	D	I	L	I	S	D	H	V	I	E	R	I	N	C	T	N	G	K	I	N	W	G	I	G	I	G	L	A	G	S	T	Y	D	N	N	Y	P	E	D	Q	A	V	K	N	F	V	V	A	N	I	T
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	S	E	N	I	W	I	E	N	C	E	A	T	G	F	G	D	D	G	I	T	T	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	S	Q	Y	I	N	I	L	N	C	Y	S	H	D	P	R
Template Known Secondary structure										S					S		S	S		S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S								S							S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.																																										.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		255	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		G	S	D	C	R	Q	L	I	H	V	E	N	G	.	K	H	F	V	I	R	N	I	K	A	R	N	I	T	P	D	F	S	K	K	A	G	I	D	N	A	T	V	A	I	Y	G	C	D	N	F	V	I	D	N	I	E	M	I	N	S	A	G	M	L	I	G	Y	G	V	I	K	G	K	Y	L	S	I	P	Q	N
Query Conservation															.
Alig confidence															.																												.	.	.	.	.																													.
Template Conservation																																											.	.	.	.	.																													.
Template Sequence		L	T	A	N	C	N	G	F	E	I	D	D	G	S	R	H	V	V	L	S	N	N	R	S	K	G	C	Y	G	G	I	E	I	K	A	H	G	D	A	P	A	.	.	.	.	.	A	Y	N	I	S	I	N	G	H	M	S	V	E	D	V	R	S	Y	N	F	R	H	I	G	H	H	A	A	.	T	A	P	Q	S
Template Known Secondary structure		S	S	S	S			S					T	T													S	S	S									T	T	S			.	.	.	.	.													S		S								T	T	S		S	S	.	S	S
Template Predicted Secondary structure																																											.	.	.	.	.																													.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.						.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	V	N	D	I	Q	L	D	N	T	H	L	A	Y	K	L	R	G	I	Q	I	S	A	G	N	A	V	S	F	V	A	L	T	N	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	A	K	N	I	V	A	S	N	L	V	S	I	R	P	N	N	K	R	G	F	Q	D	N	A	T	P	R	V	L	A	V	S	A	Y	Y
Template Known Secondary structure		S	S													S				S	S															S
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions