Job Description P71244 Confidence 95.60% Date Thu Jan 5 12:12:40 GMT 2012 Rank 11 Aligned Residues 283 % Identity 24% Template c3gq8A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:preneck appendage protein; PDBTitle: crystal structure of the bacteriophage phi29 gene product2 12 n-terminal fragment in complex with 2-(n-3 cyclohexylamino)ethane sulfonic acid (ches) Resolution 2.00 Å

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		34	.	.	.	.	.	40	.	.	.						.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.
Query SS confidence												.	.	.	.	.
Query Sequence		S	V	N	I	N	D	Y	N	P	H	.	.	.	.	.	D	W	I	A	S	F	K	Q	A	F	S	E	G	Q	T	V	V	V	P	A	G	L	V	C	D	N	I	N	T	G	I	F	I	P	P	G	K	T	L	H	I	L	G	S	L	R	G	N	G	R	G	R	F	V	L	Q	D	G	S	Q	V	T	G	E	D
Query Conservation												.	.	.	.	.
Alig confidence												.	.	.	.	.																									.	.														.	.	.	.	.	.
Template Conservation																																									.	.														.	.	.	.	.	.
Template Sequence		G	V	S	V	K	T	Y	G	A	K	G	D	G	V	T	D	D	I	R	A	F	E	K	A	I	E	S	G	F	P	V	Y	V	P	Y	G	T	F	M	.	.	V	S	R	G	I	K	L	P	S	N	T	V	L	.	.	.	.	.	.	T	G	A	G	K	R	N	A	V	I	R	F	M	D	S	V	G	R	G	E
Template Known Secondary structure		S			G	G	G	G	T																			T	S	S						S					.	.		S	S						S	S				.	.	.	.	.	.			S		T	T	T							T	T			S	S
Template Predicted Secondary structure																																									.	.														.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.							.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	S	M	H	N	I	T	L	D	V	R	G	S	D	C	T	I	K	G	L	T	M	S	G	F	G	P	V	T	Q	I	Y	I	G	G	K	N	K	R	V	M	R	N	L	I	I	D	N	L	T	V	S	H	A	N	Y	A	I	L	R	Q	G	F	H	N	Q	I	I	G	A	N	I	T	N	C	K	F	S	D
Query Conservation
Alig confidence				.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	.	M	Y	N	E	N	V	T	T	G	N	E	N	I	F	L	S	S	F	T	L	D	G	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	L	G	Q	G	I	S	G	I	G	G	S	R
Template Known Secondary structure			S	.				S		T	T	T																G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G		S	S				S	S	T	T	T
Template Predicted Secondary structure				.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		176	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.																																								.	.	.	.	.	.	.	.	210	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.							.
Predicted Secondary structure																																																																											.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.
Query Sequence		L	Q	G	D	A	I	E	W	N	V	A	I	N	D	R	D	I	L	I	S	D	H	V	I	E	R	I	N	C	T	N	G	K	I	N	W	G	I	G	I	G	L	A	G	S	T	Y	D	N	N	Y	P	E	D	Q	A	V	K	N	F	V	V	A	N	I	T	G	S	D	C	R	Q	L	.	.	.	.	.	.	I
Query Conservation																																																																											.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.													.	.																									.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.													.	.
Template Sequence		E	S	N	L	S	I	R	A	C	H	N	V	Y	I	R	D	I	E	A	V	D	C	T	L	.	.	.	.	.	.	.	.	.	.	.	H	G	I	D	I	T	C	G	G	L	D	Y	.	.	P	Y	L	G	D	G	T	T	A	P	N	P	S	E	N	I	W	I	E	N	C	E	A	T	G	F	G	D	D	G	I
Template Known Secondary structure		T		S					S													S		S	S	.	.	.	.	.	.	.	.	.	.	.		S						S	S	S	S		.	.					T	T				S	S									S					S		S	S		S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.													.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.												240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	E	N	G	K	H	F	V	I	R	N	I	K	A	R	N	I	T	P	D	F	S	K	K	A	G	I	D	N	A	T	V	A	I	Y	G	C	D	N	F	V	I	D	N	I	E	M	I	N	S	A	G	M	L	I	G	Y	G	V	I	K	G	K	Y	L	S	I	P	Q	N	F	R	V	N	D	I	Q	L	D
Query Conservation
Alig confidence																			.	.	.	.	.																																.	.	.
Template Conservation																			.	.	.	.	.																																.	.	.
Template Sequence		T	T	H	H	S	Q	Y	I	N	I	L	N	C	Y	S	H	D	.	.	.	.	.	P	R	L	T	A	N	C	N	G	F	E	I	D	D	G	S	R	H	V	V	L	S	N	N	R	S	K	G	C	Y	G	.	.	.	G	I	E	I	K	A	H	G	D	A	P	A	A	Y	N	I	S	I	N	G	H	M	S	V
Template Known Secondary structure					S								S						.	.	.	.	.		S	S		S	S			S					T	T								S					S	S	S		.	.	.								T	T	S
Template Predicted Secondary structure																			.	.	.	.	.																																.	.	.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.						300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330				.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	H	L	A	Y	K	L	R	G	I	Q	I	S	A	G	N	A	V	S	F	V	A	L	T	N	I	E	M	K	R	A	S	L	E	L	H	N	K	P	Q	H	F	F
Query Conservation
Alig confidence																																		.
Template Conservation																																		.
Template Sequence		E	D	V	R	S	Y	N	F	R	H	I	G	H	H	A	A	T	A	P	Q	S	V	S	A	K	N	I	V	A	S	N	L	.	V	S	I	R	P	N	N	K	R	G	F
Template Known Secondary structure		S		S								T	T	S		S	T	T	S				S	S										.				S				T	T
Template Predicted Secondary structure																																		.
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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