Job Description P71244 Confidence 37.78% Date Thu Jan 5 12:12:40 GMT 2012 Rank 28 Aligned Residues 256 % Identity 19% Template c2pyhB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4; PDBTitle: azotobacter vinelandii mannuronan c-5 epimerase alge4 a-module2 complexed with mannuronan trisaccharide Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		36	.	.	.	40	.	.	.						.	.	.	.	.	.	50	.	.	.						.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70						.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure										.	.	.	.	.											.	.	.	.	.																		.	.	.	.	.
Query SS confidence										.	.	.	.	.											.	.	.	.	.																		.	.	.	.	.
Query Sequence		N	I	N	D	Y	N	P	H	.	.	.	.	.	D	W	I	A	S	F	K	Q	A	F	.	.	.	.	.	S	E	G	Q	T	V	V	V	P	A	G	L	V	C	D	N	I	.	.	.	.	.	N	T	G	I	F	I	P	P	G	K	T	L	H	I	L	G	S	L	R	G	N	G	R	G	R	F	V	L	Q	D
Query Conservation										.	.	.	.	.											.	.	.	.	.																		.	.	.	.	.
Alig confidence										.	.	.	.	.											.	.	.	.	.																		.	.	.	.	.														.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.
Template Sequence		N	V	K	D	F	G	A	L	G	D	G	V	S	D	D	R	A	S	I	Q	A	A	I	D	A	A	Y	A	A	G	G	G	T	V	Y	L	P	A	G	E	Y	R	V	S	A	A	G	E	P	G	D	G	C	L	M	L	K	D	G	V	Y	L	A	.	.	.	.	.	.	G	A	G	M	G	E	T	V	I	K	L
Template Known Secondary structure			G	G	G	G	T																							T	T								S									S	S	G	G	G		S					T	T					.	.	.	.	.	.		S	S	T	T	T
Template Predicted Secondary structure																																																																	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.							.	.	.	70	.	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.								.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.
Query Sequence		G	S	Q	V	T	G	E	D	G	G	S	M	H	N	I	T	L	D	V	R	G	S	D	C	T	I	K	G	L	T	M	S	G	F	G	P	V	T	.	.	.	.	.	.	.	Q	I	Y	I	G	G	K	N	K	R	V	M	R	N	L	I	I	D	N	L	T	V	S	H	A	N	Y	A	I	L	R	Q	G	F	H
Query Conservation																																								.	.	.	.	.	.	.
Alig confidence																	.																							.	.	.	.	.	.	.																													.	.
Template Conservation																	.																																																										.	.
Template Sequence		I	D	G	S	D	Q	K	I	T	G	M	V	R	S	A	.	Y	G	E	E	T	S	N	F	G	M	R	D	L	T	L	D	G	N	R	D	N	T	S	G	K	V	D	G	W	F	N	G	Y	I	P	G	G	D	G	A	D	R	D	V	T	I	E	R	V	E	V	R	E	M	S	G	Y	.	.	G	F	D	P	H
Template Known Secondary structure			T	T		B	S		B	S		S					.	T	T																	G	G	G		B	S		B		S					S		T	T	S	S																	S	S		.	.	S
Template Predicted Secondary structure																	.																																																										.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.															.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	Q	I	I	G	A	N	I	T	N	C	K	F	S	D	L	Q	G	D	A	I	E	W	N	V	A	I	N	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	L	I	S	D	H	V	I	E	R	I	N	C	T	N	G	K	I	N	W	G	I	G	I	G	L	A	G	S	T	Y	D	N	N	Y
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																																																																.
Template Sequence		E	Q	T	I	N	L	T	I	R	D	S	V	A	H	D	N	G	L	D	G	F	V	A	D	Y	L	V	D	S	V	F	E	N	N	V	A	Y	A	N	D	R	H	G	F	N	V	V	T	S	T	H	D	F	V	M	T	N	N	V	A	Y	G	.	N	G	S	S	G	L	V	V	Q	R	G	L	E	D	L	A	L
Template Known Secondary structure		S									S					S		S	S		S					S								S					S		S	S		S					S	S								S					S	.		S	S		S							S	S	S
Template Predicted Secondary structure																																																																.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	D	Q	A	V	K	N	F	V	V	A	N	I	T	G	S	D	C	R	Q	L	I	H	V	E	N	G	K	H	F	V	I	R	N	I	K	A	R	N	I	T	P	D	F	S	K	K	A	G	I	D	N	A	T	V	A	I	Y	G	C	D	N	F	V	I	D	N	I	E	M	I	N	S	A	G
Query Conservation
Alig confidence										.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Template Sequence		P	S	N	I	L	I	D	G	.	.	.	.	G	A	Y	Y	D	N	A	R	E	G	V	L	L	K	M	T	S	D	I	T	L	Q	N	A	D	I	H	G	N	.	.	.	.	.	.	.	.	.	.	G	S	S	G	V	R	V	Y	G	A	Q	D	V	Q	I	L	D	N	Q	I	H	D	N	A	Q
Template Known Secondary structure									S	.	.	.	.					S		S	S		S					S								S					S		.	.	.	.	.	.	.	.	.	.	S	S		S					S		B	S					S					S			S
Template Predicted Secondary structure										.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.					.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270											.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions