Job Description P71244 Confidence 95.84% Date Thu Jan 5 12:12:40 GMT 2012 Rank 8 Aligned Residues 286 % Identity 18% Template c2iq7D_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:endopolygalacturonase; PDBTitle: crystal structure of the polygalacturonase from colletotrichum lupini2 and its implications for the interaction with polygalacturonase-3 inhibiting proteins Resolution 1.94 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.						.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																								.	.																																	.	.	.	.	.
Query SS confidence																								.	.																																	.	.	.	.	.
Query Sequence		S	V	N	I	N	D	Y	N	P	H	D	W	I	A	S	F	K	Q	A	F	S	E	.	.	G	Q	T	V	V	V	P	A	G	L	V	C	D	N	I	N	T	G	I	F	I	P	P	G	K	T	L	H	I	L	G	S	.	.	.	.	.	L	R	G	N	G	R	G	R	F	V	L	Q	D	G	S	Q	V	T	G
Query Conservation																								.	.																																	.	.	.	.	.
Alig confidence											.	.	.											.	.																	.	.	.	.													.	.	.	.	.
Template Conservation											.	.	.																													.	.	.	.
Template Sequence		S	C	T	F	T	D	A	A	A	.	.	.	A	I	K	G	K	A	S	C	T	S	I	I	L	N	G	I	V	V	P	A	G	T	T	L	D	M	T	G	.	.	.	.	L	K	S	G	T	T	V	T	F	Q	G	K	T	T	F	G	Y	K	E	W	E	G	P	L	I	S	F	S	G	T	N	I	N	I	N	G
Template Known Secondary structure						S	S				.	.	.					G	G	G		S						S					T	T							S	.	.	.	.			T	T							S									S				S							S
Template Predicted Secondary structure											.	.	.																													.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.				.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.					.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		107	.	.	110	.	.	.																				.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	D	G	G	S	M	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	T	L	D	V	R	G	S	D	C	T	I	K	G	L	T	M	S	G	F	G	P	V	T	Q	I	Y	I	G	G	K	N	K	R	V	M	R	N	L	I	I	D	N	L	T	V	S	H	A	N	Y	A	I
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.
Template Sequence		A	S	G	H	S	I	D	C	Q	G	S	R	W	W	D	S	K	G	S	N	G	G	K	T	K	P	K	F	F	Y	A	H	S	L	K	S	S	N	I	K	G	L	N	V	L	N	T	P	V	Q	A	F	S	I	N	S	A	T	.	.	.	.	.	.	T	L	G	V	Y	D	V	I	I	D	N	S	A	G	D	S
Template Known Secondary structure			T	T							G	G	G	T			S		T	T	S	S	S	S																									S	S							S			.	.	.	.	.	.						S						G	G	G	G	G
Template Predicted Secondary structure																																																												.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.							.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		168	.					170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure				.	.	.	.					.
Query SS confidence				.	.	.	.					.
Query Sequence		L	R	.	.	.	.	Q	G	F	H	.	N	Q	I	I	G	A	N	I	T	N	C	K	F	S	D	L	Q	G	D	A	I	E	W	N	V	A	I	N	D	R	D	I	L	I	S	D	H	V	I	E	R	I	N	C	T	N	G	K	I	N	W	G	I	G	I	G	L	A	G	S	T	Y	D	N	N	Y	P	E	D
Query Conservation				.	.	.	.					.
Alig confidence				.	.	.	.					.															.												.	.	.	.	.	.	.	.														.	.	.																.	.	.	.
Template Conservation																											.												.	.	.	.	.	.	.	.														.	.	.																.	.	.	.
Template Sequence		A	G	G	H	N	T	D	A	F	D	V	G	S	S	T	G	V	Y	I	S	G	A	N	V	K	.	N	Q	D	D	C	L	A	I	N	S	G	.	.	.	.	.	.	.	.	T	N	I	T	F	T	G	G	T	C	S	G	G	.	.	.	H	G	L	S	I	G	S	V	G	G	R	S	D	N	T	.	.	.	.
Template Known Secondary structure		T	T			S			S					S								S					.		S	S		S				S	S		.	.	.	.	.	.	.	.							S					S	S	.	.	.									S	S	S	S				.	.	.	.
Template Predicted Secondary structure																											.												.	.	.	.	.	.	.	.														.	.	.																.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.									.	.	210	.	.	.	.	.	.	.	.	.	220				.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300																	.	.	.	.
Predicted Secondary structure																			.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	V	K	N	F	V	V	A	N	I	T	G	S	D	C	R	.	.	Q	L	I	H	V	E	N	G	K	H	F	V	I	R	N	I	K	A	R	N	I	T	P	D	F	S	K	K	A	G	I	D	N	A	T	V	A	I	Y	G	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	F	V
Query Conservation																			.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																.	.																									.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																										.	.	.	.	.
Template Sequence		.	.	V	K	T	V	T	I	S	N	S	K	I	V	N	S	D	N	G	V	R	I	K	T	V	S	G	A	T	G	S	V	S	G	V	T	Y	S	G	I	T	L	S	.	.	.	.	.	N	I	A	K	Y	G	I	V	I	E	Q	D	Y	E	N	G	S	P	T	G	T	P	T	N	G	V	P	I	T	G	L	T
Template Known Secondary structure		.	.													S		S									T	T																	.	.	.	.	.			S	S											T	T				S				S	S	S
Template Predicted Secondary structure		.	.																																										.	.	.	.	.
Template SS confidence
				236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.						.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	N	I	E	M	I	N	S	A	G	M	L	I	G	Y	G	V	I	K	G	K	Y	L	S	I	P	Q	N	F	R	V	N	D	I	Q	L	D	N	T	H	L	A	Y	K	L	R	G	I	Q	I	S	A	G
Query Conservation
Alig confidence																										.	.	.
Template Conservation																										.	.	.
Template Sequence		L	S	K	I	T	G	S	V	A	S	S	G	T	N	V	Y	I	L	C	A	S	G	A	C	.	.	.	S	N	W	K	W	S	G	V	S	V	T	G	G	K	K	S	T	K	C	S	N	I	P	S	G	S	G
Template Known Secondary structure											T	T	S									T	T			.	.	.												S	S	B			S			B				T	T	S	S
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.				.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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