Job Description P71244 Confidence 52.18% Date Thu Jan 5 12:12:40 GMT 2012 Rank 19 Aligned Residues 207 % Identity 14% Template c1dbgA_ PDB info PDB header:lyase Chain: A: PDB Molecule:chondroitinase b; PDBTitle: crystal structure of chondroitinase b Resolution 1.70 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	F	S	E	G	Q	T	V	V	V	P	A	G	L	V	C	D	N	I	N	T	G	I	F	I	P	P	G	K	T	L	H	I	L	G	S	L	R	G	N	G	R	G	R	F	V	L	Q	D	G	S	Q	V	T	G	E	D	G	G	S	M	H	N	I	T	L	D	V	R	G	S	D	C	T	I	K	G	L	T
Query Conservation
Alig confidence																					.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	E	V	K	P	G	G	L	V	Q	I	A	D	G	T	Y	K	D	V	.	.	.	Q	L	I	V	S	N	S	G	K	S	G	L	P	I	T	I	K	A	L	N	P	G	K	V	F	F	T	G	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	E	L	R	G	E	H	L	I	L	E	G	I	W
Template Known Secondary structure						T	T							S					T		.	.	.									B	T	T	B							S	S	T	T	S						S		.	.	.	.	.	.	.	.	.	.	.	.	.						S	S	S					S
Template Predicted Secondary structure																					.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.				.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.														.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		131	.	.	.	.	.										.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.																																																															.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.																																																															.	.	.
Query Sequence		M	S	G	F	G	P	.	.	.	.	.	.	.	.	.	V	T	Q	I	Y	I	G	G	K	N	K	R	V	M	R	N	L	I	I	D	N	L	T	V	S	H	A	N	Y	A	I	L	R	Q	G	F	H	N	Q	I	I	G	A	N	I	T	N	C	K	F	S	D	L	Q	G	D	A	I	E	W	N	V	.	.	.
Query Conservation								.	.	.	.	.	.	.	.	.																																																															.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.																																																															.	.	.
Template Conservation
Template Sequence		F	K	D	G	N	R	A	I	Q	A	W	K	S	H	G	P	G	L	V	A	I	Y	G	S	Y	N	R	I	T	A	C	V	F	D	C	F	D	E	A	N	S	A	Y	I	T	T	S	L	T	E	D	G	K	V	P	Q	H	C	R	I	D	H	C	S	F	T	D	K	I	T	F	D	Q	V	I	N	L	N	N	T
Template Known Secondary structure									T	T	T			T	T	S			S					S	S	S					S					S			S	S		S		S							T	T						S					S								S	S	S		S					S	S
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
											199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.															.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	A	I	N	D	R	D	I	L	I	S	D	H	V	I	E	R	I	N	C	T	N	G	K	I	N	W	G	I	G	I	G	L	A	G	S	T	Y	D	N	N	Y	P	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	V	K	N	F	V	V	A	N	I	T	G
Query Conservation		.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																								.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.
Template Sequence		A	R	A	I	K	D	G	S	V	G	G	P	G	M	Y	H	R	V	D	H	C	F	F	S	N	P	Q	K	P	G	N	A	.	G	G	G	I	R	I	G	Y	Y	R	N	D	I	G	R	C	L	V	D	S	N	L	F	M	R	Q	D	S	E	A	E	I	I	T	S	K	S	Q	E	N	V	Y	Y	G	N	T	Y
Template Known Secondary structure					S				S												S									S	S	S		.			S					S	S	T	T		B							S								S	S	S							S	B	S					S
Template Predicted Secondary structure																																		.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	C	R	Q	L	I	H	V	E	N	G	K	H	F	V	I	R	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	N	C	Q	G	T	M	N	F	R	H	G	D	H	Q	V	A	I	N
Template Known Secondary structure			S		S	S								S	S					S
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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