Job Description P77718 Confidence 39.30% Date Thu Jan 5 12:32:03 GMT 2012 Rank 154 Aligned Residues 73 % Identity 19% Template c3p8bB_ PDB info PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 Resolution 1.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.					.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.
Query SS confidence																																															.	.	.	.
Query Sequence		F	I	I	K	L	F	P	E	I	T	I	K	S	Q	S	V	R	L	R	F	I	K	I	L	T	G	N	I	R	N	V	L	K	H	Y	D	E	T	L	A	V	V	R	H	W	.	.	.	.	D	N	I	E	V	R	A	K	D	E	N	Q	R	L	A	I	R	D	A	L	T	R	I	P	G	I	H	H	I	L	E
Query Conservation																																															.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.											.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.																																													.	.	.
Template Sequence		F	A	V	R	.	.	.	.	.	.	.	.	.	.	.	V	T	H	G	Q	E	E	T	T	A	K	L	I	Y	S	K	V	R	T	Y	N	L	P	I	Y	A	I	L	A	P	S	R	V	K	G	Y	I	F	V	E	A	P	N	K	.	.	.	G	V	V	D	E	A	I	R	G	I	R	H	A	R	G	V	L	P
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.			T	T																	T										T	T			S							S	S		.	.	.								T	T		T	T						S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.																																													.	.	.
Template SS confidence
		6	.	.	.												10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.				.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		79	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	D	V	P	F	T	D	M	H	D	I
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		G	E	.	V	P	F	K	E	I	E	H	F
Template Known Secondary structure		S		.	B		G	G	G	T	G	G	G
Template Predicted Secondary structure				.
Template SS confidence
		72	.		.	.	.	.	.	.	80	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions