Job Description P77718 Confidence 98.78% Date Thu Jan 5 12:32:03 GMT 2012 Rank 82 Aligned Residues 179 % Identity 14% Template c3k0bA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted n6-adenine-specific dna methylase; PDBTitle: crystal structure of a predicted n6-adenine-specific dna methylase2 from listeria monocytogenes str. 4b f2365 Resolution 1.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	F	I	I	K	L	F	P	E	I	T	I	K	S	Q	S	V	R	L	R	F	I	K	I	L	T	G	N	I	R	N	V	L	K	H	Y	D	E	T	L	A	V	V	R	H	W	D	N	I	E	V	R	A	K	D	E	N	Q	R	L	A	I	R	D	A	L	T	R	I	P	G	I	H	H	I	L	E	V	E
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.																.																			.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.																.																			.	.
Template Sequence		F	Q	L	V	A	T	.	.	.	.	.	.	.	.	.	.	.	A	A	S	G	L	E	A	I	V	G	K	E	V	A	R	L	.	.	.	.	.	.	G	Y	D	P	K	V	E	N	G	K	V	Y	F	E	G	.	D	L	S	A	I	A	R	A	N	L	W	L	R	V	A	D	R	V	.	.	K	I	V	V	G
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.			T	T												T	.	.	.	.	.	.	T							T	T							.													S	S		S			.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.																.																			.	.
Template SS confidence
		4	.	.	.	.	.												10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.							.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.						.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																								.	.																																					.	.	.	.	.
Query SS confidence																								.	.																																					.	.	.	.	.
Query Sequence		D	V	P	F	T	D	M	H	D	I	F	E	K	A	L	V	Q	Y	R	D	Q	L	.	.	E	G	K	T	F	C	V	R	V	K	R	R	G	K	H	D	F	S	S	I	D	V	E	R	Y	V	G	G	G	L	N	Q	H	I	E	S	.	.	.	.	.	A	R	V	K	L	T	N	P	D	V	T	V	H	L	E
Query Conservation																								.	.																																					.	.	.	.	.
Alig confidence																								.	.																																					.	.	.	.	.
Template Conservation
Template Sequence		V	F	K	A	T	T	F	D	E	L	F	E	K	T	K	A	L	P	W	E	D	Y	L	P	L	D	A	Q	F	P	V	A	G	K	S	V	K	S	T	L	Y	S	V	P	D	C	Q	A	I	V	K	K	A	I	V	N	R	V	S	E	K	Y	R	R	S	G	R	L	X	E	T	G	A	L	F	K	L	E	V	S
Template Known Secondary structure						S	S										T	S		G	G	G	T			T	T		B									S	S	S																							T	T	T		T	T			S		S	S	B
Template Predicted Secondary structure
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	D	D	R	L	L	L	I	K	G	R	Y	E	G	I	G	G	F	P	I	G	T	Q	E	D	V	L	S	L	I	S	G	G	F	D	S	G	V	S	S	Y	M	L	M	R	R	G	C	R
Query Conservation
Alig confidence													.	.	.	.
Template Conservation													.	.	.	.
Template Sequence		I	L	K	D	E	V	T	L	T	I	D	.	.	.	.	T	S	G	A	G	L	H	K	R	G	Y	R	L	A	Q	G	S	A	P	I	K	E	T	X	A	A	A	L	V	L	L	T	S	W	H
Template Known Secondary structure				T	T								.	.	.	.	S	S	S	S		T	T			S	T	T	T	T	S		S		S													S
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.					.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions