Job Description P77718 Confidence 100.00% Date Thu Jan 5 12:32:03 GMT 2012 Rank 1 Aligned Residues 367 % Identity 29% Template c2c5sA_ PDB info PDB header:rna-binding protein Chain: A: PDB Molecule:probable thiamine biosynthesis protein thii; PDBTitle: crystal structure of bacillus anthracis thii, a trna-2 modifying enzyme containing the predicted rna-binding3 thump domain Resolution 2.5 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	I	I	K	L	F	P	E	I	T	I	K	S	Q	S	V	R	L	R	F	I	K	I	L	T	G	N	I	R	N	V	L	K	H	Y	D	E	T	L	A	V	V	R	H	W	D	N	I	E	V	R	A	K	D	E	N	Q	R	L	A	I	R	D	A	L	T	R	I	P	G	I	H	H	I	L	E	V	E	D
Query Conservation
Alig confidence												.	.	.				.																					.																			.
Template Conservation												.	.	.				.																					.																			.
Template Sequence		E	Y	I	L	V	R	Y	G	E	M	.	.	.	G	K	N	.	R	S	K	F	V	S	T	L	K	D	N	V	K	F	K	L	K	K	F	P	.	N	I	K	I	D	A	T	H	D	R	M	Y	I	Q	L	N	G	E	.	D	H	E	A	V	S	E	R	L	K	D	V	F	G	I	H	K	F	N	L	A	M	K
Template Known Secondary structure												.	.	.				.																T	T	T	S	T	.	T							S	S							T	T		.										T	T		T	T
Template Predicted Secondary structure												.	.	.				.																					.																			.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.				.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.															.
Query SS confidence																							.															.
Query Sequence		V	P	F	T	D	M	H	D	I	F	E	K	A	L	V	Q	Y	R	D	Q	L	.	E	G	K	T	F	C	V	R	V	K	R	R	G	K	.	H	D	F	S	S	I	D	V	E	R	Y	V	G	G	G	L	N	Q	H	I	E	S	A	R	V	K	L	T	N	P	D	V	T	V	H	L	E	V	E	D	D	R	L
Query Conservation																							.															.
Alig confidence				.																			.															.
Template Conservation				.
Template Sequence		V	P	.	S	E	L	E	D	I	K	K	G	A	L	A	A	F	L	Q	V	K	G	D	V	K	T	F	K	I	T	V	H	R	S	Y	K	H	F	P	M	R	T	M	E	L	L	P	E	I	G	G	H	I	L	E	N	T	E	D	I	T	V	D	V	H	N	P	D	V	N	V	R	V	E	I	R	S	G	Y	S
Template Known Secondary structure				.	S	S														T			S														T	T		S	S															T	T	S	S	S					S	S	S		S									S	S
Template Predicted Secondary structure				.
Template SS confidence
		81	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	I	K	G	R	Y	E	G	I	G	G	F	P	I	G	T	Q	E	D	V	L	S	L	I	S	G	G	F	D	S	G	V	S	S	Y	M	L	M	R	R	G	C	R	V	H	Y	C	F	F	N	L	G	G	A	A	H	E	I	G	V	R	Q	V	A	H	Y	L	W	N	R	F	G	S	S	H	R	V	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	I	M	C	D	E	R	M	G	A	G	G	L	P	V	G	V	G	G	K	V	M	V	L	L	S	G	G	I	D	S	P	V	A	A	Y	L	T	M	K	R	G	V	S	V	E	A	V	H	F	H	S	P	P	F	T	S	E	R	A	K	Q	K	V	I	D	L	A	Q	E	L	T	K	Y	C	K	R	V	T	L
Template Known Secondary structure													S	B		T	T	T	T									S	S	S												B	T											T	T	T	S																G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	I	N	F	E	P	V	V	G	E	I	L	E	K	I	D	D	G	Q	M	G	V	I	L	K	R	M	M	V	R	A	A	S	K	V	A	E	R	Y	G	V	Q	A	L	V	T	G	E	A	L	G	Q	V	S	S	Q	T	L	T	N	L	R	L	I	D	N	V	S	D	T	L	I	L	R	P	L	I	S	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	L	V	P	F	T	E	V	Q	K	T	I	N	K	E	I	P	S	S	Y	S	M	T	V	M	R	R	M	M	M	R	I	T	E	R	I	A	E	E	R	N	A	L	A	I	T	T	G	E	S	L	G	Q	V	A	S	Q	T	L	D	S	M	H	T	I	N	E	V	T	N	Y	P	V	I	R	P	L	I	T	M
Template Known Secondary structure																	S		G	G	G																				T	T										S	S	S	T	T	S										G	G	G			S					T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.																																	.
Query SS confidence																				.																																	.
Query Sequence		D	K	E	H	I	I	N	L	A	R	Q	I	G	T	E	D	F	A	.	R	T	M	P	E	Y	C	G	V	I	S	K	S	P	T	V	K	A	V	K	S	K	I	E	A	E	E	E	K	F	D	F	.	S	I	L	D	K	V	V	E	E	A	N	N	V	D	I	R	E	I	A
Query Conservation																				.																																	.
Alig confidence																				.				.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	K	L	E	I	I	K	I	A	E	E	I	G	T	Y	D	I	S	I	R	P	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	K	R	E	K	A	N	R	F	E	A	K	Y	D	F	T	P	L	I	D	E	A	V	A	N	K	E	T	M	V	L	Q	T	V	E
Template Known Secondary structure													T	T						T	S			.	.	.	.	.	.	.	.	.	.	.	.	.												T	T	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.														.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions