Job Description P77718 Confidence 100.00% Date Thu Jan 5 12:32:03 GMT 2012 Rank 2 Aligned Residues 300 % Identity 23% Template c1vbkA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph1313; PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3 Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		M	K	F	I	I	K	L	F	P	E	I	T	I	K	S	Q	S	V	R	L	R	F	I	K	I	L	T	G	N	I	R	N	V	L	K	H	Y	D	E	T	L	.	A	V	V	R	H	W	D	N	I	E	V	R	A	K	D	E	N	Q	R	L	A	I	R	D	A	L	T	R	I	P	G	I	H	H	I	L	E	V
Query Conservation																																											.
Alig confidence																																											.																	.	.	.
Template Conservation																																																												.	.	.
Template Sequence		M	N	V	V	I	V	R	Y	G	E	I	G	T	K	S	R	Q	T	R	S	W	F	E	K	I	L	M	N	N	I	R	E	A	L	V	T	E	E	V	P	Y	K	E	I	F	S	R	H	G	R	I	I	V	K	T	N	S	P	.	.	.	K	E	A	A	N	V	L	V	R	V	F	G	I	V	S	I	S	P	A
Template Known Secondary structure												T	T				S	S																				T	T				S						T	T							S			.	.	.								T	T	S	T	T
Template Predicted Secondary structure																																																												.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.				.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.						.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																										.	.	.	.	.														.
Query SS confidence																										.	.	.	.	.														.
Query Sequence		E	D	V	P	F	T	D	M	H	D	I	F	E	K	A	L	V	Q	Y	R	D	Q	L	E	.	.	.	.	.	G	K	T	F	C	V	R	V	K	R	R	G	K	.	H	D	F	S	S	I	D	V	E	R	Y	V	G	G	G	L	N	Q	H	I	E	S	A	R	V	K	L	T	N	P	D	V	T	V	H	L	E
Query Conservation																										.	.	.	.	.														.
Alig confidence						.																				.	.	.	.	.														.																				.
Template Conservation						.																																																										.
Template Sequence		M	E	V	E	.	A	S	L	E	K	I	N	R	T	A	L	L	M	F	R	K	K	A	K	E	V	G	K	E	R	P	K	F	R	V	T	A	R	R	I	T	K	E	F	P	L	D	S	L	E	I	Q	A	K	V	G	E	Y	I	L	N	N	.	E	N	C	E	V	D	L	K	N	Y	D	I	E	I	G	I	E
Template Known Secondary structure						.																						T		S	S										S	S	S		S	S	S																	.	S	S					S	S	S		S
Template Predicted Secondary structure						.																																																										.
Template SS confidence
		78	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	D	D	R	L	L	L	I	K	G	R	Y	E	G	I	G	G	F	P	I	G	T	Q	E	D	V	L	S	L	I	S	G	G	F	D	S	G	V	S	S	Y	M	L	M	R	R	G	C	R	V	H	Y	C	F	F	N	L	G	G	A	A	H	E	I	G	V	R	Q	V	A	H	Y	L	W	N	R	F	G	S
Query Conservation
Alig confidence																																					.																										.	.	.	.
Template Conservation																																					.																										.	.	.	.
Template Sequence		I	M	Q	G	K	A	Y	I	Y	T	E	K	I	K	G	W	G	G	L	P	I	G	T	E	G	R	M	I	G	I	L	H	D	E	L	.	S	A	L	A	I	F	L	M	M	K	R	G	V	E	V	I	P	V	Y	I	G	K	D	D	K	.	.	.	.	N	L	E	K	V	R	S	L	W	N	L	L	K	R	Y
Template Known Secondary structure				T	T						S								S	B		T	T	T	T								S	S			.											B	T									S		S	S		.	.	.	.														T	T
Template Predicted Secondary structure																																					.																										.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.					.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	H	R	V	R	F	V	A	I	N	F	E	P	V	V	G	E	I	L	E	K	I	D	D	G	Q	M	G	V	I	L	K	R	M	M	V	R	A	A	S	K	V	A	E	R	Y	G	V	Q	A	L	V	T	G	E	A	L	G	Q	V	S	S	Q	T	L	T	N	L	R	L	I	D	N	V	S	D	T	L	I	L
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.
Template Sequence		S	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	G	F	L	V	V	A	E	S	F	D	R	V	L	K	L	I	R	D	F	G	V	K	G	V	I	K	G	L	R	P	N	D	L	N	S	E	V	S	E	I	T	E	D	F	.	K	M	F	P	V	P	V	Y
Template Known Secondary structure			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S								S	S												T										G	G	G			T	T									.				S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.
Template SS confidence
		231	.	.																							.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	L	I	S	Y	D	K	E	H	I	I	N	L	A	R	Q	I	G	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	P	L	I	A	L	P	E	E	Y	I	K	S	V	K	E	R	L	G	L
Template Known Secondary structure							S													T
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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