 |
Job Description | P00956 | Confidence | 96.35% | Date | Thu Jan 5 10:57:19 GMT 2012 |
Rank | 76 | Aligned Residues | 63 |
% Identity | 25% | Template | c3a05A_ |
PDB info |
PDB header:ligase | Chain: A: PDB Molecule:tryptophanyl-trna synthetase; |
PDBTitle: crystal structure of tryptophanyl-trna synthetase from2 hyperthermophilic archaeon, aeropyrum pernix k1 complex3 with tryptophan
|
Resolution | 2.20 Å |
|
 |
  |   |
556 | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | |
|
. | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | |
610 | . | |
|
|
|
. | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . |
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
| . | . | . | . |
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
Query Sequence |   |
A | D | M | Y | L | E | G | S | D | Q | H | R | G | W | F | M | S | S | L | M | I | S | T | A | M | K | G | K | A | P | Y | . |
. |
R | Q | V | L | T | H | G | F | T | V | D | G | Q | G | R | K | M | S | K | S | I | G | N | . |
T | V | . |
. |
. |
. |
S | P | Q | D | V | M | N | K |
Query Conservation |   |
  |
|   |   |   |
|
|   |
|
|   |
|   |
|
|   |   |   |
|   |   |   |   |   |
|   |   |   |   |
|
| . | . |
|   |
|   |   |
|
|   |
|
|
|   |   |
|   |
|
|
|
|
|   |
|
| . |
|
| . | . | . | . |   |
|   |   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
| . | . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|
|
|
|   |
|
|   |   | . |   |   |   |
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |
|
|   |
|   |
|   |
|
|
|
|
|   |   |
|
|
|
|   |
|   |
|
|
|
|   |
|   |   |
|
Template Sequence |   |
H | V | V | V | P | V | G | A | D | Q | D | P | . |
H | L | R | L | T | R | D | L | A | D | R | M | A | G | V | V | E | L | E | R | P | A | S | T | Y | H | K | L | Q | P | G | L | D | G | R | K | M | S | S | S | R | P | D | S | T | I | F | L | T | D | P | P | E | V | A | R | N | K |
Template Known Secondary structure |   |
|  |  |  |  |  |  | G | G | G |  |  | . |  |  |  |  |  |  |  |  |  |  |  | T | T | T | T | S |
|
|
|
|
|  |  |  |  |  |
|
|
| B |
| T | T | S | S | B |
|
| T | T | S | G | G | G | S |
| B | T | T |
|
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
209 | 210 | . | . | . | . | . | . | . | . | . | 220 | |
. | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|