 |
Job Description | P00956 | Confidence | 87.20% | Date | Thu Jan 5 10:57:19 GMT 2012 |
Rank | 98 | Aligned Residues | 82 |
% Identity | 21% | Template | c2ip1A_ |
PDB info |
PDB header:ligase | Chain: A: PDB Molecule:tryptophanyl-trna synthetase; |
PDBTitle: crystal structure analysis of s. cerevisiae tryptophanyl trna2 synthetase
|
Resolution | 1.80 Å |
|
 |
  |   |
38 | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | G | I | I | R | A | A | K | K | G | K | K | T | F | I | L | H | D | G | P | P | Y | A | N | G | S | I | H | I | G | H | S | V | N | K | I | L | K | D | I | I | V | K | S | K | G | L | S | G | Y | D | S | P | Y | V | P | G | W | D | C | H | G | L | P | I | E | L | K | V | E | Q | E | Y | G | K | P | G | E | K | F |
Query Conservation |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|
|
|   |   |
|
|
|
|
|   |
|
|   |
|
|   |
|   |   |
|   |   |   |   |
|
|
|   |
|
|
|
|
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |   |
|
|
|   |   |
|
|
|
|
|   |
|   |   |   |   | . | . | . |   |   |   |
|
|   |   |   |   |   |   |
|   |
|   |
|
|
|   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |
Template Sequence |   |
F | T | K | I | L | D | L | Y | E | Q | G | K | P | F | F | L | Y | T | G | R | G | P | S | S | D | S | M | H | L | G | H | M | I | P | F | V | F | . |
. |
. |
T | K | W | L | Q | E | V | F | D | V | P | L | V | I | E | L | T | D | D | E | K | F | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
F | K | H | K | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T |
|
|
|  |  |  |  |  |  |
|
|
| S | S |
|
| B | G | G | G |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |
|  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |
| T | T |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
143 | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | |
|
|
180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . |
  |
  |   |
118 | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | A | A | E | F | R | A | K | C | R | E | Y | A | A | T | Q | V |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|
|
|   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|   |   |   |   |   |
|   |   |   |   |
|
|
Template Sequence |   |
T | I | N | D | V | K | N | F | A | R | E | N | A | K | D | I | I |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
208 | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|