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Job DescriptionP00956
Confidence100.00%DateThu Jan 5 10:57:19 GMT 2012
Rank5Aligned Residues726
% Identity18%Templatec1wkbA_
PDB info PDB header:ligaseChain: A: PDB Molecule:leucyl-trna synthetase; PDBTitle: crystal structure of leucyl-trna synthetase from the2 archaeon pyrococcus horikoshii reveals a novel editing3 domain orientation
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   20.........30.........40.........50.........60.........70.........80.........90.........
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Query Sequence  DLAKREPGMLARWTDDDLYGIIRAAKKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHG
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Template Sequence  NFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITG
Template Known Secondary structure 

TTTT


GGGS
GGG


BTTS

BT




BB

B
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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   100.........110......... 120.........130.........140.........150........ .160......
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Query Sequence  LPIELKVEQEYGKPGEKFTA. . . . . . . . . . . AEFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMD. . FKTEANII
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Template Sequence  SPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIE
Template Known Secondary structure  STT
TS


GGGSTT



GGG

B
STTS
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   85....90.........100.........110.........120.........130.........140.........150.........160....
 
   167..170.........180.........190.........200.... .....210.........220.........230.........240....
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Query Sequence  RALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYD. . KTSPSIDVAFQAVDQDALKAKFAVSNVNGPISLVIWTTTP
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Template Sequence  WQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENG. . . . . . . . . . . . EVIYLPAATLRP
Template Known Secondary structure  TT
TTTT

TT

SB
SS



SS
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S
G
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   165....170.........180.........190.........200.........210.........220 .........230..
 
   245....250.........260...... ...270.........280.........290.........300.........310.........320
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Query Sequence  WTLPANRAISIAPDFDYALVQI. . . . DGQAVILAKDLVESVMQRIGVTDYTILGTVKGAELELLRFTHPFMGFDVPAILG
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Template Sequence  ETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDR. . EIEVIEEFKGEKLIGKYVRNPVSGDEVIILPA
Template Known Secondary structure  GGGGG


TTS
TTTTSS
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TTTTTTT

SSS


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   233......240.........250.........260.........270........ .280.........290.........300.........310
 
   321........330.........340.........350 .........360.......
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Query Sequence  DHVTLDAGTGAVHTAPGHGPDDYVIGQKYG. . . . . . . . . . . . . . . . LETANPVGPDGTYLPGT. . . . . . . . . . . . . . . . .
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Template Sequence  EFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYH
Template Known Secondary structure  TTS
TTSTTS

TTT



S

S


TT
S







TT

SGGGTS


TT
S
T
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   311........320.........330.........340.........350.........360.........370.........380.........390
 
   368.370.........380.........390.........400.........410.........420.........430.........440..
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Query Sequence  . . . . . YPTLDGVNVFKANDIVVALLQEKGALLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDQKGLRAQSLKEIKGVQ
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Template Sequence  KGIFKVPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMK
Template Known Secondary structure  S

SGGGTTTTTSSSS

B
TTS
B

TT
TS
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   407..410.........420.........430.........440.........450.........460.........470.........480......
 
   443......450.........460.........470..... ....480.........490.........500.........510.......
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Query Sequence  WIPDWGQARIESMVANRPDWCISRQRTWGVPMS. . . . . LFVHKDTEELHPRTLELMEEVAKRVEVDGIQAWWDLDAKEIL
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Template Sequence  ILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDP. . EKLTPEFF
Template Known Secondary structure  SGGG



SSSBS
TT
TTTSSSSTT


G..GG

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   487..490.........500.........510.........520.........530.........540.........550...... ...560....
 
   518.520.........530.........540...... ...550.........560.........570.........580.........590......
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Query Sequence  GDEADQYVKVPDTLDVWFDSGSTHSSVVD. VRPEFAGHAADMYLEGSDQHRGWFMSSLMISTAMKGKAPYRQVLTHGFTV
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Template Sequence  DYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFG
Template Known Secondary structure  S


S


S
SGGGTTTS
GGGS



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   565....570.........580.........590.........600.........610.........620.........630.........640....
 
   597..600.........610.........620.........630 .........640.........650.........660.........670.....
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Query Sequence  DGQGRKMSKSIGNTVSPQDVMNKLGADILRLWVA. STDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNGFDPAKDM
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Template Sequence  TLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAE. . . . . . . . YEV
Template Known Secondary structure  TTB


TTTT


B


TT


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   645....650.........660.........670.........680.........690.........700.........710... ...
 
   676...680.........690.........700.........710.........720.........730.........740.........750.....
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Query Sequence  VKPEEMVVLDRWAVGCAKAAQEDILKAYEAYDFHEVVQRLMRFCSVEMGSFYLDIIKDRQYTAKADSVARRSCQTALYHI
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Template Sequence  KGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDL. RWYLRRTEGR. . . . . . . . . DDEAKRYVLRTL
Template Known Secondary structure 
S




TT
T.TTT
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   717..720.........730.........740.........750.........760.... .....770.... .....780......
 
   756...760.........770.........
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Query Sequence  AEALVRWMAPILSFTADEVWGYLP
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Template Sequence  ADVWVRLMAPFTPHICEELWEKLG
Template Known Secondary structure  TTTS

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   787..790.........800.........810
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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