Job Description P00956 Confidence 100.00% Date Thu Jan 5 10:57:19 GMT 2012 Rank 2 Aligned Residues 791 % Identity 30% Template c1ileA_ PDB info PDB header:aminoacyl-trna synthetase Chain: A: PDB Molecule:isoleucyl-trna synthetase; PDBTitle: isoleucyl-trna synthetase Resolution 2.50 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	D	L	A	K	R	E	P	G	M	L	A	R	W	T	D	D	D	L	Y	G	I	I	R	A	A	K	K	G	K	K	T	F	I	L	H	D	G	P	P	Y	A	N	G	S	I	H	I	G	H	S	V	N	K	I	L	K	D	I	I	V	K	S	K	G	L	S	G	Y	D	S	P	Y	V	P	G	W	D	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	P	N	F	P	K	L	E	E	E	V	L	A	F	W	K	R	E	K	I	F	Q	K	S	V	E	N	R	K	G	G	P	R	Y	T	V	Y	E	G	P	P	T	A	N	G	L	P	H	V	G	H	A	Q	A	R	S	Y	K	D	L	F	P	R	Y	K	T	M	R	G	Y	Y	A	P	R	R	A	G	W	D	T
Template Known Secondary structure																			T	T									T	T	T	S		B			B							T	T	S				T	T																		T	T		B
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.					.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																			.	.	.	.
Query SS confidence																			.	.	.	.
Query Sequence		H	G	L	P	I	E	L	K	V	E	Q	E	Y	G	K	P	G	.	.	.	.	E	K	F	T	A	A	E	F	R	A	K	C	R	E	Y	A	A	T	Q	V	D	G	Q	R	K	D	F	I	R	L	G	V	L	G	D	W	S	H	P	Y	L	T	M	D	F	K	T	E	A	N	I	I	R	A	L	G	K	I	I
Query Conservation																			.	.	.	.
Alig confidence																			.	.	.	.
Template Conservation
Template Sequence		H	G	L	P	V	E	L	E	V	E	K	K	L	G	L	K	S	K	R	E	I	E	A	Y	G	I	E	R	F	N	Q	A	C	R	E	S	V	F	T	Y	E	K	E	W	E	A	F	T	E	R	I	A	Y	W	V	D	L	E	D	A	Y	A	T	L	E	P	T	Y	I	E	S	I	W	W	S	L	K	N	L	F
Template Known Secondary structure														T	T			S																				T	T	T	T					T	T					T	T											T	T	S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		G	N	G	H	L	H	K	G	A	K	P	V	H	W	C	V	D	C	R	S	A	L	A	E	A	E	V	E	.	.	Y	Y	D	K	T	S	P	S	I	D	V	A	F	Q	A	V	D	Q	D	A	L	K	A	K	F	A	V	S	N	V	N	G	P	I	S	L	V	I	W	T	T	T	P	W	T	L	P	A	N	R
Query Conservation																														.	.
Alig confidence																														.	.																								.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.
Template Sequence		D	R	G	L	L	Y	R	D	H	K	V	V	P	Y	C	P	R	C	G	T	P	L	S	S	H	E	V	A	L	G	Y	K	E	I	Q	D	P	S	V	Y	V	R	F	P	L	K	E	P	K	K	L	G	L	.	.	.	.	.	.	.	.	E	K	A	S	L	L	I	W	T	T	T	P	W	T	L	P	G	N	V
Template Known Secondary structure			T	T													T	T	T	T											T															B	S	S	G	G	G	G	T		.	.	.	.	.	.	.	.	S	S								S		G	G	G	G	G	G
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.									220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.				.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.
Query SS confidence																																																														.	.	.
Query Sequence		A	I	S	I	A	P	D	F	D	Y	A	L	V	Q	I	D	G	Q	A	V	I	L	A	K	D	L	V	E	S	V	M	Q	R	I	G	V	T	D	Y	T	I	L	G	T	V	K	G	A	E	L	E	L	L	R	F	T	H	P	F	M	.	.	.	G	F	D	V	P	A	I	L	G	D	H	V	T	L	D	A	G
Query Conservation																																																														.	.	.
Alig confidence																																		.	.	.	.																									.	.	.
Template Conservation																																		.	.	.	.
Template Sequence		A	A	A	V	H	P	E	Y	T	Y	A	A	F	Q	V	G	D	E	A	L	I	L	E	E	G	L	G	R	K	L	L	G	.	.	.	.	E	G	T	Q	V	L	K	T	F	P	G	K	A	L	E	G	L	P	Y	T	P	P	Y	P	Q	A	L	E	K	G	Y	F	V	V	L	A	D	Y	V	S	Q	E	D	G
Template Known Secondary structure							T	T	S								T	T							T	T						T		.	.	.	.	T	T	S												T	T		B	B			S	S					S	S		S	B					T	T			S	S	S	S
Template Predicted Secondary structure																																		.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270					.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	A	V	H	T	A	P	G	H	G	P	D	D	Y	V	I	G	Q	K	Y	G	L	E	T	A	N	P	V	G	P	D	G	T	Y	L	P	G	T	Y	P	T	L	D	G	V	N	V	F	K	A	N	D	I	V	V	A	L	L	Q	E	K	G	A	L	L	H	V	E	K	M	Q	H	S	Y	P	C	C	W	R
Query Conservation
Alig confidence																																									.	.	.
Template Conservation																																									.	.	.
Template Sequence		T	G	I	V	H	Q	A	P	A	F	G	A	E	D	L	E	T	A	R	V	Y	G	L	P	L	L	K	T	V	D	E	E	G	K	L	L	V	E	P	.	.	.	F	K	G	L	Y	F	R	E	A	N	R	A	I	L	R	D	L	R	G	R	G	L	L	F	K	E	E	S	Y	L	H	S	Y	P	H	C	W	R
Template Known Secondary structure			S						T	T	S											T	T							B		T	T	S	B	B		S	G	G	.	.	.	G	T	T		B															T	T														B		S	S
Template Predicted Secondary structure																																									.	.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.				.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.			.
Predicted Secondary structure																																											.																																				.	.
Query SS confidence																																											.																																				.	.
Query Sequence		H	K	T	P	I	I	F	R	A	T	P	Q	W	F	V	S	M	D	Q	K	G	L	R	A	Q	S	L	K	E	I	K	G	V	Q	W	I	P	D	W	G	Q	.	A	R	I	E	S	M	V	A	N	R	P	D	W	C	I	S	R	Q	R	T	W	G	V	P	M	S	L	F	V	H	K	D	T	E	E	.	.	L
Query Conservation																																											.																																				.	.
Alig confidence																					.	.																					.																																				.	.
Template Conservation																					.	.
Template Sequence		C	S	T	P	L	M	Y	Y	A	T	E	S	W	F	I	K	N	T	L	.	.	F	K	D	E	L	I	R	N	N	Q	E	I	H	W	V	P	P	H	I	K	E	G	R	Y	G	E	W	L	K	N	L	V	D	W	A	L	S	R	N	R	Y	W	G	T	P	L	P	I	W	V	C	Q	A	C	G	K	E	E	A
Template Known Secondary structure		S			B													G	G	G	.	.	G											S			S	S	G	G	G	T	T	T	T	T						T								B			S	S	S		B							S	S	S	S
Template Predicted Secondary structure																					.	.
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410			.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.						550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure																																																																		.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.
Query Sequence		H	P	R	T	L	E	L	M	E	E	V	A	K	R	V	E	V	D	G	I	Q	A	W	W	D	L	D	A	K	E	I	L	G	D	E	A	D	Q	Y	V	K	V	P	D	T	L	D	V	W	F	D	S	G	S	T	H	S	S	V	V	D	V	R	P	.	.	.	.	.	E	F	A	G	H	A	A	D	M	Y	L
Query Conservation																																																																		.	.	.	.	.
Alig confidence																																																																		.	.	.	.	.
Template Conservation
Template Sequence		I	G	S	F	Q	E	L	K	A	R	A	T	K	P	L	P	E	P	F	D	P	H	R	P	Y	V	D	Q	V	E	L	A	C	A	C	G	G	T	M	R	R	V	P	Y	V	I	D	V	W	Y	D	S	G	A	M	P	F	A	S	L	H	Y	P	F	E	H	E	E	V	F	R	E	S	F	P	A	D	F	I	A
Template Known Secondary structure				S								B	S	S				S	S				S					T	T						T	T	S	S						S		B														T	T	T	T	T	T	S									S	S	B	S	B
Template Predicted Secondary structure
Template SS confidence
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630		.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		E	G	S	D	Q	H	R	G	W	F	M	S	S	L	M	I	S	T	A	M	K	G	K	A	P	Y	R	Q	V	L	T	H	G	F	T	V	D	G	Q	G	R	K	M	S	K	S	I	G	N	T	V	S	P	Q	D	V	M	N	K	L	G	A	D	I	L	R	L	W	V	A	.	S	T	D	Y	T	G	E	M	A
Query Conservation																																																																								.
Alig confidence																																																																								.
Template Conservation
Template Sequence		E	G	I	D	Q	T	R	G	W	F	N	S	L	H	Q	L	G	V	M	L	F	G	S	I	A	F	K	N	V	I	C	H	G	L	I	L	D	E	K	G	Q	K	M	S	K	S	K	G	N	V	V	D	P	W	D	I	I	R	K	F	G	A	D	A	L	R	W	Y	I	Y	V	S	A	P	P	E	A	D	R	R
Template Known Secondary structure				G	G	G	G	G	T														S	S		S	B	S											T	T	S	S				T	T	T	T										T	T	T													S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.
		640	.	.	.	.	.	.		.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.		.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.
Predicted Secondary structure									.																											.
Query SS confidence									.																											.
Query Sequence		V	S	D	E	I	L	K	.	R	A	A	D	S	Y	R	R	I	R	N	T	A	R	F	L	L	A	N	L	N	G	F	D	P	A	.	K	D	M	V	K	P	E	E	M	V	V	L	D	R	W	A	V	G	C	A	K	A	A	Q	E	D	I	L	K	A	Y	E	A	Y	D	F	H	E	V	V	Q	R	L	M	R
Query Conservation									.																											.
Alig confidence									.																											.
Template Conservation
Template Sequence		F	G	P	N	L	V	R	E	T	V	R	D	Y	F	L	T	L	W	N	V	Y	S	F	F	V	T	Y	A	N	L	D	R	P	D	L	K	N	P	P	P	P	E	K	R	P	E	M	D	R	W	L	L	A	R	M	Q	D	L	I	Q	R	V	T	E	A	L	E	A	Y	D	P	T	T	S	A	R	A	L	R	D
Template Known Secondary structure														T																						T	T	S				S	T	T	S																								T	T
Template Predicted Secondary structure
Template SS confidence
		630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.
		718	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780					.	.	.	.	.	.	.	.	.	790	.	.	.
Predicted Secondary structure																																																																	.	.	.	.
Query SS confidence																																																																	.	.	.	.
Query Sequence		F	C	S	V	E	M	G	S	F	Y	L	D	I	I	K	D	R	Q	Y	T	A	K	A	D	S	V	A	R	R	S	C	Q	T	A	L	Y	H	I	A	E	A	L	V	R	W	M	A	P	I	L	S	F	T	A	D	E	V	W	G	Y	L	P	G	.	.	.	.	E	R	E	K	Y	V	F	T	G	E	W	Y	E
Query Conservation																																																																	.	.	.	.
Alig confidence																							.																																										.	.	.	.
Template Conservation																							.
Template Sequence		F	V	V	E	D	L	S	Q	W	Y	V	R	R	N	R	R	R	F	W	K	N	.	E	D	A	L	D	R	E	A	A	Y	A	T	L	Y	E	A	L	V	L	V	A	T	L	A	A	P	F	T	P	F	L	A	E	V	L	W	Q	N	L	V	R	S	V	R	L	E	A	K	E	S	V	H	L	A	D	W	P	E
Template Known Secondary structure							S	S	T	T	T										T		.	T	T	T	S	S	T	T																		T	T	T	S	T	T										T	T	T	T	S	T	T	S		S	S	G	G	G	S
Template Predicted Secondary structure																							.
Template SS confidence
		710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730		.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.
		794	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	F	G	L	A	D	S	E	A	M	N	D	A	F	W	D	E	L	L	K	V	R	G	E	V	N	K	V	I	E	Q	A	R	A	D	K	K	V
Query Conservation
Alig confidence															.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.
Template Sequence		A	D	P	A	L	A	D	E	A	L	V	A	Q	.	.	.	.	.	.	M	R	A	V	L	K	V	V	D	L	A	R	A	A	R	A	K	S	G	V
Template Known Secondary structure				T	T	T									.	.	.	.	.	.												T	T		T	T	S
Template Predicted Secondary structure															.	.	.	.	.	.
Template SS confidence
		789	790	.	.	.	.	.	.	.	.	.	800	.							.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.