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Job DescriptionP00956
Confidence99.70%DateThu Jan 5 10:57:19 GMT 2012
Rank47Aligned Residues392
% Identity16%Templatec1g59A_
PDB info PDB header:ligase/rnaChain: A: PDB Molecule:glutamyl-trna synthetase; PDBTitle: glutamyl-trna synthetase complexed with trna(glu).
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   57..60.........70.........80.........90.........100.........110.........120.........130......
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Query Sequence  PPYANGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPIELKVEQEYGKPGEKFTAAEFRAKCREYAATQVDG
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Template Sequence  APSPTGDPHVGTAYIALFNYAWAR. . . . . RNGGRFIVRIED. . . . . . . . . . . . . TDRARY. . . . . . . . . . . . . VPGAEER
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SSS
B.....TT

B

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TTT
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TT
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   7..10.........20.........30 .........40.. ...... .50.....
 
   137..140......... 150......... 160.........170.........180.........190.........200.........210.
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Query Sequence  QRKDFIRLGVLGD. WSHPYLTMDF. . . . KTEANIIRALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSID
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Template Sequence  ILAALKWLGLSYDEGPDVAAPTGPYRQSERLPLYQKYAEELLKRGWAYRA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT


SB
SSS

SSS
SBGGGGTTTS..............................
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   56...60.........70.........80.........90.........100.....
 
   212.......220.........230.........240.........250.........260.........270.........280.........290.
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Query Sequence  VAFQAVDQDALKAKFAVSNVNGPISLVIWTTTPWTLPANRAISIAPDFDYALVQIDGQAVILAKDLVESVMQRIGVTDYT
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Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   292.......300.........310.........320.........330.........340.........350.........360.........370.
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Query Sequence  ILGTVKGAELELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHTAPGHGPDDYVIGQKYGLETANPVGPDGTYLPGTYPTL
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Template Conservation  .............................................             ..................    
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FETPEELEQIRKE. . . . . . . . . . . . . . . . . . KGGY
Template Known Secondary structure  .............................................


..................SSS
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   106...110........ .120..
 
   372.......380.........390.........400.........410. ........420.........430.........440.......
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Query Sequence  DGVNVFKANDIVVALLQEKGALLHVEKMQHSYPCCWRHKT. . . . PIIFRATPQWFVSMDQKGLRAQSLKEIKGVQWIPDW
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Template Sequence  DGRARNIPPEEAEERARRGE. . . . . . . . . . . . PHVIRLKVPRPGTTEVKDELRGVVVYDN. . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 

GGGGS
TT
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SS
TTTG....................
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   123......130.........140.. .......150.........160.........170
 
   448.450.........460.........470.........480.........490.........500.........510.........520.......
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Query Sequence  GQARIESMVANRPDWCISRQRTWGVPMSLFVHKDTEELHPRTLELMEEVAKRVEVDGIQAWWDLDAKEILGDEADQYVKV
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Template Sequence  . . . . . . . . . QEIPDVVLLKSDGY. . . . PTY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  .........GGS



TTS
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   171........180.... ...
 
   528.530.........540.........550.........560.........570.........580.........590.........600.......
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Query Sequence  PDTLDVWFDSGSTHSSVVDVRPEFAGHAADMYLEGSDQHRGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQGRKMSKSI
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Template Sequence  . . . . . . HLANVVDD. HLMG. . . . . . . . . VTDVIRAEEWLVSTPIHVLLYR. AFGWEAP. . RFYHMPLLRNPDKTKISKRK
Template Known Secondary structure  .......TT.........

GGGTTT.TT



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B
TTSSB

TTT
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   188.190..... .... 200.........210.........220. ....... .230.........240........
 
   608.610.........620.........630.........640.........650.........660.........670.........680.......
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Query Sequence  GNTVSPQDVMNKLGADILRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNGFDPAKDMVKPEEMVVLDRW
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Template Sequence  SHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFT. . . . . . . . . . . . WERVSLGGPVFDLEKLRWMNGK
Template Known Secondary structure  S

BTT

TTB

TT







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S

B

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   249250.........260.........270.........280.........290.... .....300.........310......
 
   688.690. ........700.........710.........720...... ...730.........740.........750........
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Query Sequence  AVGC. . . . . . . AKAAQEDILKAYEAYDFHEVVQRLMRFCSVEMGSF. . YLDIIKDRQYTAKADSVARRSCQTALYHIAEA
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Template Conservation                                               
 
                             
  
Template Sequence  YIREVLSLEEVAERVKPFLREAGLSWESEAYLRRAVELMRPRFDTLKEFPEKARYLFTEDYPVSEKAQRKLEEGLPLLKE
Template Known Secondary structure  TS
TT


S
GGG
SSTTSGGGT
S




T
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   317..320.........330.........340.........350.........360.........370.........380.........390......
 
   759760.........770........
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Query Sequence  LVRWMAPILSFTADEVWGYL
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Template Conservation 
   
          
   
Template Sequence  LYPRLRAQEEWTEAALEALL
Template Known Secondary structure  T
S


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   397..400.........410......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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